Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0715 ATGAAGAAATCAACCAGTGACTCCGGCTCCTCAAAGCCCGATCGCAAAACTATAGAAAGAAACCGCAGAATTCACATGAAATCTCTCTGCTTCAAGCTTGCTTCTCTTATTCCTTCCCACTACTTACGACACACCAAGGACACGATATCACAGCAAGACCAGCTGGATATGGCGGCAACCTACATAAAGAATCTGAGAGAGAAATTGGAGAAACTGAAGGGGCAGAAGGAGGAAGCGACAAGGTCAAACCAAATTACAAGTTGTGCTGGAATGGAGCAAATGTCGATGGGGTCGAATCTGCAGGTGCCGGTGCTGGAGCTAAGAGACATAGGTTCCAGCATAGAAGTGATGCTGATAAGCGGGTTGAACAAGAACTTCATGCTCTACGAAGTAATCAGCGTGCTGGAAGAAGAAGGCGCCGACGTCGTGAGCGCAAGCTTTTCCACTGTGGGAGATAAGATTTTCCACACAGTTCATGCCCAGGCCAAGATATCAAGAGTGGGAGTAGAGACTTCAAGAGTATATCAGAGGCTTCAGGATTTGATCGCCCCACTAGACAGCTGGGAGTGCATATAA 576 0.474 MKKSTSDSGSSKPDRKTIERNRRIHMKSLCFKLASLIPSHYLRHTKDTISQQDQLDMAATYIKNLREKLEKLKGQKEEATRSNQITSCAGMEQMSMGSNLQVPVLELRDIGSSIEVMLISGLNKNFMLYEVISVLEEEGADVVSASFSTVGDKIFHTVHAQAKISRVGVETSRVYQRLQDLIAPLDSWECI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0715 191 MobiDBLite consensus disorder prediction 1 21 - -
Glsi02g0715 191 Pfam Helix-loop-helix DNA-binding domain 16 65 IPR011598 GO:0046983
Glsi02g0715 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 180 - -
Glsi02g0715 191 Gene3D - 2 91 IPR036638 GO:0046983
Glsi02g0715 191 Coils Coil 55 82 - -
Glsi02g0715 191 SMART finulus 16 71 IPR011598 GO:0046983
Glsi02g0715 191 FunFam Transcription factor bHLH162 1 94 - -
Glsi02g0715 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 84 IPR036638 GO:0046983
Glsi02g0715 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0715 Glsi-ChrGlsi02 4673988 4674780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0715 1 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.263 8.58e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g0715 HLH 1.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0715 02 4673988 4674780 Glsi02g0715 02 4673988 4674780 ECH