Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0712 ATGTGTTTGATATTATCATCTTATGATCTTGACAAGCAGATCGTAAATTCCAAACCAACAAGAGTTGAGTTATGCATTGATGTTTGTCTTCATTCTAGGGTTTTCCAAAGTTGTTTGCTTACCATGGCTATTAGAGGCGTCGACTTTAAGTGGTACGATGGGTTTTTCTTATCGATGCTCGCCACCAGCATAGTTATTGTTGCAATCAATTGGAAGCGGTATCATTCTTGTACGTACCCGTTGCATATATGGATTGTGGTTGACTATACTACTGTGTTTATTTTCCGGCTGCTAATGTTTGTTGATAATGGACTTGCTGCTGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGGTATGCTCGTTTCTGTGGAAGGGTAGTAATCCTCTCAATCCTTGCCTTGCTTCTCTATCCATTCCTTTGGGCTTGGACTATAATTGGTACCCTTTGGTTCAGCAGTGCCAAGAATTGCTTGCATGAAGAGGGTCAGAAATGGGGCTTCCTCATTTGGCTGCTCTTTAGCTACTGTGGACTCCTTTGTATAGCTTGCTTGTCCTTGGGGAAGTGGTTGACACGAAGACAAGCACACTTAGTACGTGCCCAACAGGGTATTCCTATATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGCCAAGAAATAAGAGGCATGGGCCAGGATGCTGCTGCATATCAGCCTGGAATTTACCTAACTCCAGCCCAGAGAGAAGCGGTTGAAGCATTAATTCAGGAACTCCCAAAGTTCAGGTTGAAAGCTGTTCCAACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTCCGCGGCCTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGACTGAATGTGAAATGTCCCCGTTGCCGATGCTCAGTATTTCCAAATCTTGACCTTAGTGCTTTGTCTAATCTACGTGCTGAATCAGAACGATCTTCTGCCAGTGTTGTAACAACAACCAGATATGTGAGAGGTCAGCCTTCCAGTCAGAGTTATCTGTTGAGATTACAGGGTCTTCTATGCCCTGTGCGTGCAGAAATTGCAGGGCCAGGTGGTGACAGGGACAATATTTTGGACAATGCAGAGAGCATTGTTGTACCTGTGGTGACTCAAAATGCATCAACTGGAGACCAGGCCCCTTCAGTTGAATGCATGCCTGTTACTCTTTCCCCTGCACAAAATTAG 1266 0.4502 MCLILSSYDLDKQIVNSKPTRVELCIDVCLHSRVFQSCLLTMAIRGVDFKWYDGFFLSMLATSIVIVAINWKRYHSCTYPLHIWIVVDYTTVFIFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVILSILALLLYPFLWAWTIIGTLWFSSAKNCLHEEGQKWGFLIWLLFSYCGLLCIACLSLGKWLTRRQAHLVRAQQGIPISEYGVLVDMIRVPDWAFEAAGQEIRGMGQDAAAYQPGIYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAESERSSASVVTTTRYVRGQPSSQSYLLRLQGLLCPVRAEIAGPGGDRDNILDNAESIVVPVVTQNASTGDQAPSVECMPVTLSPAQN 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0712 421 SMART ring_2 276 316 IPR001841 -
Glsi02g0712 421 FunFam E3 ubiquitin-protein ligase SIS3 244 322 - -
Glsi02g0712 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 42 401 IPR044793 GO:0004842|GO:0010182
Glsi02g0712 421 Pfam Ring finger domain 275 317 IPR001841 -
Glsi02g0712 421 SUPERFAMILY RING/U-box 258 325 - -
Glsi02g0712 421 ProSiteProfiles Zinc finger RING-type profile. 276 317 IPR001841 -
Glsi02g0712 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 322 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0712 Glsi-ChrGlsi02 4654832 4659499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0712 99 401 C3H Transcription Factor Family AT3G47990 72.222 5.25e-157 443