Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0686 ATGGAGAACCCGTTTGGCTTCCACTGCACCGCCGGTTACTCCGAGCCGTCACCAGTGCCTCCTCCACTGCAACTAACAGGTCTCGACGACTTGACGCCACCCCATATGGTTCCGTTAACTTGGACATCAGTAACCGGACCCGAGCAATTTGCCCGGTCCGGTTCTTCTTCCTCGGCGGCGCTATCGGATACTCTGTCGTCAGGGGTAGCTGAGGTTCAGATAGTGGAAGCTGGCTTGGAGGAGGAGGAGGAGGTTTCTAAAAAACTTCGCGCTAAAATCGCTTCTCATCCTTTTTATCCTAAACTGCTTGATGCCTATATCGATTGCCAAAAGGTGGGAGCGCCACCGGAGATGGCCAAACTATTAGATGAAATCGGACGAGATAGTGGCGATCTGTGTCAGAGATCTGCTTGCTTGGGTGCAGATCCCGAGCTCGACGAATTTATGGAAACATATTGCGATTTATTGGCGAAGTACAAATCGGATCTCTCGAAGCCTTTTGACGAGGCAACCGCGTTTCTCAAGAATATGGAAACTCAGCTTAACTCCCTCTGCAATGGCCCTTCCCGAAACTACAGTCCTGGTGAAGGTACTGGATCATCAGAAGAGGACCTCGGTTGGGAAGAGAAAGAGGAAAACGAGTGTAACAGGATCCATGAAGATCGAGAGCTGAAAGATAAGCTTCTACGTAGATATAGTGGCTATATTAGTAGTCTAAAGCATGAATTTTCTAAAACGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAGACAAATATTACTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCGACTGAAGAGGATAAGGCTGCTTTAGCTGAATGGACAGGTCTAGATCAGAAACAGATAAACAATTGGTTTATAAATCAAAGGAAGCGGCATTGGAAACCAACAGAGGAAATGCAAGCTGCAGTTTTAAATGGGCTCTATGGACCTTTTCTCACTAGTGACTGA 981 0.4669 MENPFGFHCTAGYSEPSPVPPPLQLTGLDDLTPPHMVPLTWTSVTGPEQFARSGSSSSAALSDTLSSGVAEVQIVEAGLEEEEEVSKKLRAKIASHPFYPKLLDAYIDCQKVGAPPEMAKLLDEIGRDSGDLCQRSACLGADPELDEFMETYCDLLAKYKSDLSKPFDEATAFLKNMETQLNSLCNGPSRNYSPGEGTGSSEEDLGWEEKEENECNRIHEDRELKDKLLRRYSGYISSLKHEFSKTKKKEKLPKEARQILLAWWNIHFKWPYPTEEDKAALAEWTGLDQKQINNWFINQRKRHWKPTEEMQAAVLNGLYGPFLTSD 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0686 326 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 312 - -
Glsi02g0686 326 ProSitePatterns 'Homeobox' domain signature. 281 304 IPR017970 GO:0000981|GO:0006355
Glsi02g0686 326 SMART KNOX2_2 135 186 IPR005541 GO:0003677|GO:0005634
Glsi02g0686 326 SMART HOX_1 245 310 IPR001356 GO:0003677
Glsi02g0686 326 Pfam KNOX1 domain 89 128 IPR005540 GO:0003677|GO:0005634
Glsi02g0686 326 Gene3D - 241 314 - -
Glsi02g0686 326 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677
Glsi02g0686 326 CDD homeodomain 255 306 IPR001356 GO:0003677
Glsi02g0686 326 SMART KNOX1_2 87 131 IPR005540 GO:0003677|GO:0005634
Glsi02g0686 326 MobiDBLite consensus disorder prediction 185 212 - -
Glsi02g0686 326 SMART ELK_2 223 244 IPR005539 GO:0003677
Glsi02g0686 326 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677|GO:0006355
Glsi02g0686 326 ProSiteProfiles ELK domain profile. 223 243 IPR005539 GO:0003677
Glsi02g0686 326 Pfam KNOX2 domain 139 185 IPR005541 GO:0003677|GO:0005634
Glsi02g0686 326 Pfam ELK domain 223 244 IPR005539 GO:0003677
Glsi02g0686 326 SUPERFAMILY Homeodomain-like 245 318 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0686 Glsi-ChrGlsi02 4466175 4475779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0686 1 324 Homeobox Transcription Factor Family AT1G23380 50.440 3.41e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi02g0686 KNOX2 2.5e-24 No_clan