Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0672 ATGGCCGATACAACCTCATCTGTGCCTGAAAAGGGCCAGTCCTCTTCGGACTCGAAAAATAAGAGGGATTATTCCACAGCAATATTGGAACGTAAGAAGTCTCCTAACCGTCTTATCGTTGATGAGGCTATTAATGATGACAATTCTGTGGTAACTTTGCATCCAGCTACGATGGAAAAGCTTCAGTTTTTCCGAGGTGACACAGTTCTGATAAAGGGAAAGAAGCGAAGGGACACAGTTTGCATTGTCCTTGTTGATGAACAGTGTGAAGAACCAAAAATTAGGATGAATAAAATTGTTCGGGCTAATCTTAGAGTACGGCTTGGTGATGTGGTATCTGTCAATCAATGTCCTGATGTGAAGTATGGGAAGCGGGTTCACATCCTTCCAATTGATGATACTATTGAGGGCATAACTGGCAACTTGTTTGACGCATATCTCAAGCCATACTTTCTGGAGTCTTACCGGCCAGTGAGGAAAGGTGACCTGTTCCTTGTTAGGGGTGGAATGCGAAGTGTTGAATTCAAGGTAATAGAGACAGATCCTGGTGAATATTGTGTTGTGGCACCAGATACTGAAATCTTCTGTGAGGGAGAACCCATCAAACGTGAAGATGAAGAGAGATTAAATGAAGTGGGCTATGATGATGTAGGTGGTGTTAGGAAGCAAATGGCTCAAATCCGTGAGTTAGTTGAACTTCCTCTTAGACACCCACAGCTCTTCAAATCAATTGGTGTTAAGCCTCCAAAGGGAATCTTGCTTTATGGACCACCTGGTTCTGGGAAGACTCTGATTGCAAGAGCAGTAGCTAATGAGACAGGTGCATTCTTCTTTTTGATTAATGGGCCAGAAATAATGTCAAAGTTGGCTGGCGAGAGTGAAAGCAACCTGAGGAAGGCATTTGAAGAAGCTGAAAAGAATTCCCCTTCTATCATCTTCATTGATGAATTAGATTCAATTGCTCCAAAGAGAGAAAAGACACATGGTGAAGTGGAGAGGCGTATTGTTTCGCAACTTTTGACTCTAATGGATGGTCTCAAGACTCGGTCACATGTTATTGTTATTGGAGCCACCAATAGACCCAATAGCATTGATCCTGCTCTGAGGAGGTTTGGGAGATTTGATCGAGAGATTGACATAGGTGTACCAGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCACACTAAAAATATGAAACTTTCAGATGATGTTGATCTTGAAAGAGTTGCCAGAGATACCCACGGTTATGTTGGTGCAGATCTTGCTGCTCTTTGCACAGAGGCTGCACTGCAGTGTATTCGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATTGATGCTGAGGTGTTGAATTCCATGGCTGTGACCAATGATCACTTCCAAACTGCTCTGGGTGCTTCAAATCCATCAGCCTTGCGTGAAACTGTTGTGGAAGTTCCTAATGTTTCCTGGGATGATATTGGGGGCTTGGAGAATGTCAAAAGGGAGCTTCAGGAGACTGTACAATACCCTGTGGAGCATCCTGAGAAGTTTGAGAAATTTGGCATGTCGCCTTCCAAAGGTGTTCTTTTTTATGGACCTCCTGGCTGTGGTAAAACCCTTCTTGCAAAAGCAATTGCTAATGAATGCCAGGCCAACTTTATAAGTGTAAAAGGACCTGAACTGCTGACAATGTGGTTTGGTGAAAGCGAGGCAAATGTACGTGAGATATTTGACAAGGCCAGGCAATCAGCTCCATGTGTTCTTTTCTTTGATGAACTTGACTCTATTGCAACCCAGCGTGGCAGTTCTGTAGGAGATGCCGGTGGTGCTGCAGACAGGGTGTTGAACCAACTATTAACAGAAATGGATGGAATGACGGCTAAGAAAACAGTTTTTATCATTGGGGCAACAAACAGGCCAGACATTATAGACCCTGCATTGCTTAGGCCTGGACGTCTGGACCAACTGATATACATCCCATTGCCAGATGAGAGTTCACGCCTTCAAATTTTTAAAGCATGTTTGAGGAAGTCACCAATCTCAAAGGATGTTGACCTAGCTGCTCTTTCCCGTTTTACACATGGATTTAGTGGTGCAGACATTACAGAAATTTGTCAACGAGCCTGCAAATATGCGATCAGAGAAGATATTGAGAAGGACATTGAGAGGGAGAGAAGAAAGAGAGAGAACCCTGAAGCTATGGAAGAAGATGAAACTGATGAGGTCCCTGAGATAAAGCCAGCCCATTTTGAGGAGTCTATGAAGTTTGCTCGTCGGAGTGTCAGTGATGCTGATATCAGGAAGTACCAAGTGTTTGCTCAAACCTTGCAACAGTCCCGTGGATTTGGATCAGAGTTTCGGTTTGCAGATCGAACTGAGAACACTGCAACCGGAGCTTCAGACCCTTTCTCTTCTGCTACTGCTGCGGGAGATGATGATGATCTGTACAATTAA 2445 0.4372 MADTTSSVPEKGQSSSDSKNKRDYSTAILERKKSPNRLIVDEAINDDNSVVTLHPATMEKLQFFRGDTVLIKGKKRRDTVCIVLVDEQCEEPKIRMNKIVRANLRVRLGDVVSVNQCPDVKYGKRVHILPIDDTIEGITGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNDHFQTALGASNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPISKDVDLAALSRFTHGFSGADITEICQRACKYAIREDIEKDIERERRKRENPEAMEEDETDEVPEIKPAHFEESMKFARRSVSDADIRKYQVFAQTLQQSRGFGSEFRFADRTENTATGASDPFSSATAAGDDDDLYN 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0672 814 PANTHER AAA-FAMILY ATPASE 410 776 - -
Glsi02g0672 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 772 IPR027417 -
Glsi02g0672 814 Gene3D - 662 770 - -
Glsi02g0672 814 CDD RecA-like_CDC48_r1-like 216 381 - -
Glsi02g0672 814 SMART CDC48_N_2 37 120 IPR003338 -
Glsi02g0672 814 ProSitePatterns AAA-protein family signature. 628 646 IPR003960 GO:0005524|GO:0016887
Glsi02g0672 814 FunFam Transitional endoplasmic reticulum ATPase 475 658 - -
Glsi02g0672 814 FunFam Cell division control 48 383 474 - -
Glsi02g0672 814 SUPERFAMILY ADC-like 33 117 IPR009010 -
Glsi02g0672 814 Gene3D - 475 658 IPR027417 -
Glsi02g0672 814 Pfam Cell division protein 48 (CDC48), N-terminal domain 37 118 IPR003338 -
Glsi02g0672 814 CDD RecA-like_CDC48_r2-like 496 656 - -
Glsi02g0672 814 Gene3D - 217 381 IPR027417 -
Glsi02g0672 814 Gene3D - 14 119 - -
Glsi02g0672 814 MobiDBLite consensus disorder prediction 790 814 - -
Glsi02g0672 814 SMART AAA_5 521 660 IPR003593 GO:0016887
Glsi02g0672 814 SMART AAA_5 248 384 IPR003593 GO:0016887
Glsi02g0672 814 FunFam Cell division control 48 120 216 - -
Glsi02g0672 814 NCBIfam CDC48 family AAA ATPase 38 774 IPR005938 GO:0016787
Glsi02g0672 814 SMART CDC48_2_2 137 203 IPR004201 -
Glsi02g0672 814 Pfam AAA+ lid domain 680 720 IPR041569 -
Glsi02g0672 814 Pfam AAA+ lid domain 404 446 IPR041569 -
Glsi02g0672 814 MobiDBLite consensus disorder prediction 1 27 - -
Glsi02g0672 814 FunFam Transitional endoplasmic reticulum ATPase 213 381 - -
Glsi02g0672 814 SUPERFAMILY Cdc48 domain 2-like 119 211 IPR029067 -
Glsi02g0672 814 Gene3D - 120 216 - -
Glsi02g0672 814 Gene3D - 383 474 - -
Glsi02g0672 814 Pfam ATPase family associated with various cellular activities (AAA) 252 381 IPR003959 GO:0005524|GO:0016887
Glsi02g0672 814 Pfam ATPase family associated with various cellular activities (AAA) 525 658 IPR003959 GO:0005524|GO:0016887
Glsi02g0672 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 473 IPR027417 -
Glsi02g0672 814 ProSitePatterns AAA-protein family signature. 352 370 IPR003960 GO:0005524|GO:0016887
Glsi02g0672 814 Pfam Cell division protein 48 (CDC48), domain 2 138 202 IPR004201 -
Glsi02g0672 814 FunFam Transitional endoplasmic reticulum ATPase 15 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0672 Glsi-ChrGlsi02 4377728 4382749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0672 454 784 Calmodulin-binding Proteins AT3G56690 42.296 4.05e-78 271