Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0671 ATGGACGAACAAGTTTGTAAGATAGAGCAGCCCACAAGACATGATTTGGTTCCTTCCCGTTGTTCCTCCCTAGGCTCAAACCTTTCTCTCTGTTCTCTCATTGGAGTTCGTAGCATAGTTGTAATGCCTGAAAACCCATGGACCCTCTTCTTCCTATTATCTGCCCTTTTACTTCAACACCATTCTTTTATAGCTTCTGCAGTTAACCCACAAGGCGAAGCTCTTCTTTCATGGAAGAAACTCCTGAACGGATCCCTGGAGGTGCTCAGTAATTGGGACCCAGGTGACGTTACACCATGTGGTTGGTTTGGAGTTAGCTGCAACTTCAAGAACGAAGTTGTACAATTAGATCTGAGGTATGTAGATTTGCTTGGAGGAGTTCCTTCTAATTTCACCACGTTGCTTTCCTTGAGCAAGCTTATCCTGACGGGAACGAACCTTACGGGTTTAATTCCTAAAGAAATAGGCACTCTTGCTCAACTCAGCTACTTGGACTTGAGTGACAATGCCTTGACTGGTGAAATCCCAAGTGAGCTTTGCTTTTTGCCTAAACTTGAGGAATTTCACCTGAATTCGAACCAGCTCGTGGGATCGATTCCACTTGCAATAGGGAACCTCACAAAGTTAGAGTGGCTGATCTTATATGATAATCAACTTAGTGGTGAAATTCCCAGCACCATCGGCAACCTAAGGAACCTGCAAGTGATTAGAGCTGGTGGAAACAAGAACCTTGGAGGTTCTTTACCCCAGGAAATTGGCAACTGTTCCAATTTGGTCATGTTAGGCGTCGCCGAAACAAGTATCTCAGGATTTCTTCCACCAACTCTTGGCCTCCTCGAGAAGCTCAACACCATTGCAATTTACACTTCCCTCCTCTCGGGTCAAATTCCTCCTGAACTCGGTGACTGCACTAAACTTCAAAACATTTATCTGTACGAGAACTCTCTCACCGGATCCATACCCAGCAAATTGGGAAATCTCAGGAATCTGAAAAATCTTCTATTATGGCAGAACAATTTAGTTGGCACCATCCCACCAGAAATTGGAAATTGCTATCAGTTATCCGTCATTGATATCTCAATGAATTCACTAACCGGAAGCATTCCCAAAAGTTTTGGAAACTTGACGGCGCTGGAAGAACTCCAACTTAGCGTCAACCAGATTTCGGGCGAGATTCCGACAGAACTAGGGAACTGCCTGGAACTCACTCACATCGAGCTGGACAACAATCAAATCACCGGTACGATTCCTTCTGAATTTGGAAACCTTAGTAACCTGACGTTGTTGTTCCTGTGGCATAACAAGCTCGAAGGAAATATACCATCTTCCCTTTCGAATTGCCAATACCTCGAGGCTGTGGACCTATCACAGAATGCATTGACGGGTTCCATACCAAAGGGGATATTCGAGCTCAAGAATCTGAACAAGCTTTTGCTACTTACCAATAATCTCTCGGGGAAGATACCATCTGAGATTGGAAATTGTTCGTCTTTGATTCGGTTCCGAGCAAACAACAATAAAATCACAGGGAACATACCCGCACATATTGGGAATTTGAGGAACTTGAATTTCTTGGATCTTGGAAACAATCGGATATCTGGTGTTATTCCGGAAGAAATCTCAGGGATCCGAAATCTCACGTTTTTGGACCTACATTCCAACTTGATCGCTGGGAGCTTGCCGGAGAGCCTGAGTCAGCTTGTCACGCTACAATTCATTGACGTCTCCGATAACATGATCGAAGGCACACTTAGCCCGAGACTTGGATCCCTTGGCTCCCTCACAAAACTGGTTGTCGGAAAAAATCATATCTCTGGGTCAATTCCGAGTCAACTCGGTTCTTGTGCGAAGCTGCAGTTGCTGGACCTCAGCAGCAATAAGCTCTCAGGAGATATCCCCGGTAGTTTGGGTAACATTCCGGCGCTGGAAATTTCACTGAACCTGAGCTGGAATAAACTCTCTGGCAATATTCCTCAAGAGTTTTCAGCCTTGGACAAGCTCGGAATCTTAGACATTTCCCACAACGAGCTCACCGGCAACCTTCAGCTTCTCGCCAACCTCCAAAATCTCGTCGTCCTCAATGTTTCGTACAACAAATTCTTTGGGCGCGTTCCCGACACGCCTTTCTTCGCGAAGCTTCCTCTCAGTATGCTTGCTGGGAACCCCTCGCTTTGCTTCTCAGGAAACCCATGCGCCGGAGACGATTCGGGACGTTCAGGTACACGCGCAAAGACGGCGCGTGTAGCTATGGTGGTCCTACTGTGCGCAGCATGTGCGCTGCTGTTGGCGGCGCTCTACGTCGTCGTCGCGGCAAAACGACGTAGGGGCCCCGGGAACGATCTTGACCTCGATGGAAGGGATAGCGACGTGGAGATGGGCCCACCTTGGGAGGTGACACTGTACCAGAAGCTCGACCTGTCAATATCTGACGTGGCAAATTGCCTCACAGCTGGCAACGTCATTGGTCGCGGACGATCCGGCGTCGTTTACAGAGTGAATATCCCGGCAGGATTAGACATCGCCGTGAAAAGGTTCAGGTCATCGGAGAAATTCTCAGCGGCGGCATTCTCGTCGGAGATTGCGACATTGGCTAGAATACGGCACCGGAATATCGTGAGGCTATTGGGTTGGGCGGCGAACCGGAGAACGAAGTTACTGTTTTATGATTATTTACCAAACGGTAATTTGGATACACTGATACACGAGGGGTGCACAGGATTGATCGAGTGGGACACCAGGTTCAGGATAGCATTGGGCCTGGCTGAGGGCTTGGCTTACTTGCACCATGACTGCGTGCCTGCTATCTTGCACCGAGACGTGAAGGCGCATAATATTTTGTTAGGAGACACATACGAACCGTGTTTGGCAGATTTTGGATTTGCTAGATTCGTGGAAGACGATCACGGTTCCTTTTCCGTTAACCCACAGTTCGCGGGCTCCTACGGCTACATTGCACCGGAATATGGATGCATGCTGAAAATCACGGAGAAGAGCGATGTGTACAGCTTCGGAGTGGTCCTGTTAGAGATATTAACGGGGAAAAGACCCGTGGATCCATCATTTCCGGACGGGCAACATGTAATTCAATGGGTCCGAGAGCACCTGAAGAGGAAGAAGGACCCAGTGGAGCTAGTGGATCCCAAGCTTCAAGGCCATCCAGATACTCAATTACAAGAGATGCTACAAGCACTTGGCATCTCTCTCCTCTGTACCAGCAATCGTGCAGAGGATCGCCCCACCATGAAAGATGTCGCCGCATTATTAAGAGAAATCCGACACGATCCTCCTGCAGGTCTTGAGGCCCACAAGCCCCCAATGATCACCAACACTTCCCAACCCTCTTCCTATTCCTCCTCTTCTGTAACCCCAGCTCAGTTGTTGCTCTTCCACCCCTCTTCTCATTCCTCATCACTTGCTTATTCATCTTCATAA 3432 0.4805 MDEQVCKIEQPTRHDLVPSRCSSLGSNLSLCSLIGVRSIVVMPENPWTLFFLLSALLLQHHSFIASAVNPQGEALLSWKKLLNGSLEVLSNWDPGDVTPCGWFGVSCNFKNEVVQLDLRYVDLLGGVPSNFTTLLSLSKLILTGTNLTGLIPKEIGTLAQLSYLDLSDNALTGEIPSELCFLPKLEEFHLNSNQLVGSIPLAIGNLTKLEWLILYDNQLSGEIPSTIGNLRNLQVIRAGGNKNLGGSLPQEIGNCSNLVMLGVAETSISGFLPPTLGLLEKLNTIAIYTSLLSGQIPPELGDCTKLQNIYLYENSLTGSIPSKLGNLRNLKNLLLWQNNLVGTIPPEIGNCYQLSVIDISMNSLTGSIPKSFGNLTALEELQLSVNQISGEIPTELGNCLELTHIELDNNQITGTIPSEFGNLSNLTLLFLWHNKLEGNIPSSLSNCQYLEAVDLSQNALTGSIPKGIFELKNLNKLLLLTNNLSGKIPSEIGNCSSLIRFRANNNKITGNIPAHIGNLRNLNFLDLGNNRISGVIPEEISGIRNLTFLDLHSNLIAGSLPESLSQLVTLQFIDVSDNMIEGTLSPRLGSLGSLTKLVVGKNHISGSIPSQLGSCAKLQLLDLSSNKLSGDIPGSLGNIPALEISLNLSWNKLSGNIPQEFSALDKLGILDISHNELTGNLQLLANLQNLVVLNVSYNKFFGRVPDTPFFAKLPLSMLAGNPSLCFSGNPCAGDDSGRSGTRAKTARVAMVVLLCAACALLLAALYVVVAAKRRRGPGNDLDLDGRDSDVEMGPPWEVTLYQKLDLSISDVANCLTAGNVIGRGRSGVVYRVNIPAGLDIAVKRFRSSEKFSAAAFSSEIATLARIRHRNIVRLLGWAANRRTKLLFYDYLPNGNLDTLIHEGCTGLIEWDTRFRIALGLAEGLAYLHHDCVPAILHRDVKAHNILLGDTYEPCLADFGFARFVEDDHGSFSVNPQFAGSYGYIAPEYGCMLKITEKSDVYSFGVVLLEILTGKRPVDPSFPDGQHVIQWVREHLKRKKDPVELVDPKLQGHPDTQLQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRHDPPAGLEAHKPPMITNTSQPSSYSSSSVTPAQLLLFHPSSHSSSLAYSSS 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0671 1143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Glsi02g0671 1143 ProSiteProfiles Protein kinase domain profile. 815 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0671 1143 FunFam LRR receptor-like serine/threonine-protein kinase 804 890 - -
Glsi02g0671 1143 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 68 241 - -
Glsi02g0671 1143 SUPERFAMILY RNI-like 308 678 - -
Glsi02g0671 1143 FunFam Putative LRR receptor-like serine/threonine-protein kinase 645 730 - -
Glsi02g0671 1143 MobiDBLite consensus disorder prediction 1105 1122 - -
Glsi02g0671 1143 Gene3D Ribonuclease Inhibitor 323 402 IPR032675 -
Glsi02g0671 1143 FunFam Leucine-rich repeat receptor protein kinase EMS1 561 644 - -
Glsi02g0671 1143 Gene3D Ribonuclease Inhibitor 219 322 IPR032675 -
Glsi02g0671 1143 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 466 560 - -
Glsi02g0671 1143 Pfam Leucine rich repeat N-terminal domain 69 108 IPR013210 -
Glsi02g0671 1143 MobiDBLite consensus disorder prediction 1095 1122 - -
Glsi02g0671 1143 Pfam Leucine rich repeat 504 556 IPR001611 GO:0005515
Glsi02g0671 1143 Pfam Leucine rich repeat 136 195 IPR001611 GO:0005515
Glsi02g0671 1143 Pfam Leucine rich repeat 593 653 IPR001611 GO:0005515
Glsi02g0671 1143 Pfam Leucine rich repeat 401 460 IPR001611 GO:0005515
Glsi02g0671 1143 Pfam Leucine rich repeat 328 388 IPR001611 GO:0005515
Glsi02g0671 1143 Gene3D Phosphorylase Kinase; domain 1 798 890 - -
Glsi02g0671 1143 SMART LRR_typ_2 591 615 IPR003591 -
Glsi02g0671 1143 SMART LRR_typ_2 375 399 IPR003591 -
Glsi02g0671 1143 SMART LRR_typ_2 423 447 IPR003591 -
Glsi02g0671 1143 SMART LRR_typ_2 206 230 IPR003591 -
Glsi02g0671 1143 SMART LRR_typ_2 543 567 IPR003591 -
Glsi02g0671 1143 SMART LRR_typ_2 158 182 IPR003591 -
Glsi02g0671 1143 SMART LRR_typ_2 519 542 IPR003591 -
Glsi02g0671 1143 SMART LRR_typ_2 327 351 IPR003591 -
Glsi02g0671 1143 SUPERFAMILY L domain-like 68 340 - -
Glsi02g0671 1143 Gene3D Ribonuclease Inhibitor 645 733 IPR032675 -
Glsi02g0671 1143 Gene3D Ribonuclease Inhibitor 403 644 IPR032675 -
Glsi02g0671 1143 Gene3D Transferase(Phosphotransferase) domain 1 891 1101 - -
Glsi02g0671 1143 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 891 1104 - -
Glsi02g0671 1143 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 402 1083 - -
Glsi02g0671 1143 ProSitePatterns Protein kinases ATP-binding region signature. 821 843 IPR017441 GO:0005524
Glsi02g0671 1143 SMART LRR_sd22_2 303 329 - -
Glsi02g0671 1143 SMART LRR_sd22_2 664 689 - -
Glsi02g0671 1143 SMART LRR_sd22_2 206 232 - -
Glsi02g0671 1143 SMART LRR_sd22_2 158 190 - -
Glsi02g0671 1143 SMART LRR_sd22_2 423 452 - -
Glsi02g0671 1143 SMART LRR_sd22_2 519 545 - -
Glsi02g0671 1143 Gene3D Ribonuclease Inhibitor 67 218 IPR032675 -
Glsi02g0671 1143 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 242 465 - -
Glsi02g0671 1143 SUPERFAMILY Protein kinase-like (PK-like) 801 1090 IPR011009 -
Glsi02g0671 1143 SMART serkin_6 815 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0671 1143 Pfam Protein kinase domain 818 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0671 Glsi-ChrGlsi02 4369930 4374876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0671 67 1141 Receptor kinase-like Gene Family AT5G56040 53.733 0.0 1113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi02g0671 Pkinase 4.2e-39 CL0016