Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0661 ATGGCATCATCCAGCAGCTCTTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGTTGCATCTTTGCTCCTTACTTCCCACCTGAAGAGCCCCAGAAATTCGCCAACGTCCACAAAATTTTTGGCGCTAGCAATGTCACTAAGCTCCTTAACGAACTCCTCCCTCACCAGAGGGAAGATGCAGTGAATTCCCTTGCCTATGAAGCAGAGGCTCGCGTCAGGGACCCAGTTTATGGCTGCGTAGGTGCCATCTCTTTCCTCCAGAGACAGGTTCAAAGGCTTCAAAAGGAGCTTGATGCTGCTAACGCTGATCTGCTGCGTTATGCCTGCAATGACATGCCTCCGGCAGGAATGGCTTCGGTTCAACCAATGCCTCAAAGGCAAAGGCCTATGGAGTTTGGTGGAAGATCAGGTGGGTATACTCTTCCTTATTCTCTTCCATGGACTGATTCCTCTAATTTGGAGGGTGGAGGAGGAGGAGGAGGAGGCATGTGCAATGTGCATGCTGATCGAGTTGACATTCCCTGTCATTGTTTATGA 558 0.4982 MASSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYACNDMPPAGMASVQPMPQRQRPMEFGGRSGGYTLPYSLPWTDSSNLEGGGGGGGGMCNVHADRVDIPCHCL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0661 185 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Glsi02g0661 185 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Glsi02g0661 185 Coils Coil 90 117 - -
Glsi02g0661 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0661 Glsi-ChrGlsi02 4294448 4295341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0661 1 163 AS2 family AT5G63090 66.304 1.13e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi02g0661 LOB 2.8e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0661 02 4294448 4295341 Glsi13g1325 13 30623413 30630779 CCT
Glsi02g0661 02 4294448 4295341 Glsi13g1325 13 30623413 30630779 ECH
Glsi02g0661 02 4294448 4295341 Glsi02g0661 02 4294448 4295341 ECH