Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0650 ATGAACCCTTACGACAACAGATATACGGACGCGACTTCTTATCGCGACCGTCGGAGTGATATAGCCGGATCTATACCGCCGATGGTGCCTCCAATAATTGGTGGTGCCAGCTCGAGCTACGGCCGCGGTGGTCCAGCTCCTTACGGTCCTCCTCCGGTTGCTTATAACGTGGGTGGAAGAGGAGCTGGAAGTGCTTTTGGAACGCCACCTGTTGCCGCAAATCATAATGCGTTGCCGCCGTTTAAGCCGCCGCCTGGAGGCTTTGACATAGGTCGAGGCGGTGGGCGCAGCGAAAGAGGCTTTAGTAGTAGACTGGACAATGGTCATGTAGGCGATAGAAAAGATGACATAAGTCGTCGTGGTAATGGAAGAGGTCGTAGCGGTGGTTTGGTTGCAGGTCGGGGCGGTGGTAGAGTTAGTGGAACTCACGGTGATAAGATCTCTGGGAGAGGAGGGTTTGGAGGTAAAAGTTTTGGTGGAAGCGCTGGATTTGGCCGTGGCCGTGGCCGTGGCGGCGGCGGCGGCAGAGGAGGAAGACATGGTGGATCTTCCAAAGATGACCTGGACAACATCGTACTTCCCAAGCAAGATTTTAGAAATTTGGTCCCCTTTGAGAAGAATTTTTACATTGAAAGCCCATCGGTGCGGGCAATGTCTGATCATGAAGTTATGCTTTACCGTGCCAGTAGAGAGATCACAGTACAAGGGCATGACGTTCCAAAACCGATTCGGGTGTTTCGCGAGGCAAATTTTCCTGATTACTGCCTCGAGGTGATTGCCAAATTAGGTTTTGTTGAGCCTACACCAATTCAGGCTCAAGGTTGGCCCATGGCTCTGAAGGGCAGAGACTTAATTGGAATTGCGGAGACTGGATCGGGTAAAACACTGTCATATCTACTGCCTGCTTTAGTGCATGTTAGTGCACAACCTCGACTGGTACCAGGTGAAGGTCCCATTGTCTTAATTCTGGCACCAACTAGAGAGTTAGCTCTTCAAATTCAAGAAGAAGCTGTAAAATTCGCTTCACGAGCAAATATTAGGAGTACTTGCATCTATGGCGGTGCACCAAAGGGGCCACAAATTCGTGATCTTAAAAGAGGCGTTGAGATTGTTATTGCTACGCCTGGTCGCCTAATAGATATGTTGGAAGCTCAGCATACAAACCTGCAGAGAGTAACTTACCTTGTGTTGGATGAAGCTGATAGAATGCTGGACATGGGCTTTGAACCTCAGATACGGAAAATTGTAGGCCAGATTCGGCCTGATAGACAGACATTGTATTGGAGTGCAACGTGGCCAAAGGAGGTTGAAACTCTGGCAAGGCAGTTTCTACGCAACCCATATAAGGTAATTATTGGATCGTCTGATCTGAAAGCAAATCAATCTATAAATCAAGTCATTGAAGTTGTGACAGAGGTGGAGAAGTACAATAGATTGATTAGACTGCTCAAAGAAGTGATGGATGGGAGCCGAATTCTGATATTCTTGGAGACGAAGAAGGGTTGTGACCATGTTACAAGACAATTGAGAATGGATGGCTGGCCTGCATTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCCTCTCTGAATTTAAGAGCGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCTCGGGGTCTTGATGTGAAGGATATAAAATGTGTGGTCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGCACTGGTCGTGCAGGGGCTAAAGGAACTGCTTACACCTTTTTCACATATGCGAATGCCAAGTTTGCTAGGGATCTGATCAAGATCTTGCAAGATGCTGGCCAGGTTGTGAGTCCTGGTCTGTCTGCCATGACTCGGACAGTGACTCGGTCAGCTGCTTCTGGTCAATTTGGATCTGGGGGAAACTTCCGCTCCAGAGGACGGGGCTATGGCAATCGAGCTCTTATATCAGGATCTAATACCATTCCTCTTGGTTTTAATAAGCCTCGTTAG 2007 0.4808 MNPYDNRYTDATSYRDRRSDIAGSIPPMVPPIIGGASSSYGRGGPAPYGPPPVAYNVGGRGAGSAFGTPPVAANHNALPPFKPPPGGFDIGRGGGRSERGFSSRLDNGHVGDRKDDISRRGNGRGRSGGLVAGRGGGRVSGTHGDKISGRGGFGGKSFGGSAGFGRGRGRGGGGGRGGRHGGSSKDDLDNIVLPKQDFRNLVPFEKNFYIESPSVRAMSDHEVMLYRASREITVQGHDVPKPIRVFREANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLVPGEGPIVLILAPTRELALQIQEEAVKFASRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPKEVETLARQFLRNPYKVIIGSSDLKANQSINQVIEVVTEVEKYNRLIRLLKEVMDGSRILIFLETKKGCDHVTRQLRMDGWPALSIHGDKNQAERDWVLSEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTYANAKFARDLIKILQDAGQVVSPGLSAMTRTVTRSAASGQFGSGGNFRSRGRGYGNRALISGSNTIPLGFNKPR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0650 668 Pfam Helicase conserved C-terminal domain 474 584 IPR001650 -
Glsi02g0650 668 Gene3D - 207 454 IPR027417 -
Glsi02g0650 668 MobiDBLite consensus disorder prediction 1 51 - -
Glsi02g0650 668 CDD SF2_C_DEAD 463 593 - -
Glsi02g0650 668 MobiDBLite consensus disorder prediction 86 190 - -
Glsi02g0650 668 FunFam probable ATP-dependent RNA helicase DDX17 206 453 - -
Glsi02g0650 668 Gene3D - 455 630 IPR027417 -
Glsi02g0650 668 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 450 IPR014001 -
Glsi02g0650 668 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 244 272 IPR014014 GO:0003724
Glsi02g0650 668 FunFam ATP-dependent RNA helicase RhlB 454 627 - -
Glsi02g0650 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 604 IPR027417 -
Glsi02g0650 668 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 396 404 IPR000629 -
Glsi02g0650 668 SMART helicmild6 503 584 IPR001650 -
Glsi02g0650 668 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 221 623 - -
Glsi02g0650 668 Pfam DEAD/DEAH box helicase 268 439 IPR011545 GO:0003676|GO:0005524
Glsi02g0650 668 MobiDBLite consensus disorder prediction 102 122 - -
Glsi02g0650 668 CDD DEADc_DDX5_DDX17 256 450 - -
Glsi02g0650 668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 478 623 IPR001650 -
Glsi02g0650 668 SMART ultradead3 263 466 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0650 Glsi-ChrGlsi02 4229824 4234156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0650 241 622 Eukaryotic Initiation Factors Gene Family AT3G19760 35.509 1.72e-68 228