Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0642 ATGGAATCAGGAGGTAGGTTCTACTCAGTCGACGACTTCAGATTGGACGCGAAATGGTTAATTGATCCTAAGCAAATATATGTTGGGCCCAGGATTGGAGAGGGAGCTCATGCCAAAGTCTACGAGGGGAAATATAAAAACCAGACGGTTGCTATTAAAATTTTACATAAAGGAGAAACTACAGAAGACATCGCCAAGAGAGAAGCCCGATTTGCAAGGGAGGTGGAAATGTTGTCTAGAGTTCAACATAAGAACTTAGTGAAGTTTATTGGTGCCTGCAAGGAGCCGGTAATGGTGATAGTCACTGAACTCTTACTGGGAGGAACATTGCGCAAGTATTTGCTTAACATGCGGCCAAAATGCTTGGACATACATGTTGCTATTGGTTTTGCCCTTGATATTGCTCGTGCCATGGAGTGTCTACATTCTCATGGGATCATCCACCGTGATCTGAAACCTGAAAACTTACTCTTGACTGAAGACCAGAAAACAGTCAAGCTAGCAGATTTTGGTTTAGCCAGAGAAGAGTCATTAACAGAGATGATGACTGCTGAAACAGGAACTTACCGTTGGATGGCTCCAGAGTTGTATAGCACTGTCACACTGAGGCAGGGAGAGAAGAAGCATTATAACCATAAAGTGGATGCTTATAGCTTTGCAATCGTGCTGTGGGAGCTCTTACATAACAAATTACCTTTTGAAGGCATGTCAAATCTCCAGGCAGCTTATGCAGCGGCTTTTAAAAATGTAAGACCCAGTGCAGAGAATCTCCCTGAAGAATTGGCTGCAATTCTAACTTTATGTTGGCAAGAGGACCCAAATGCCCGGCCTAACTTCACCCAAATAATTCAAATGCTCCTGAATTATCTTTATACTATTTCACCTCCTGCACCAACGATTCCTTCAAGAATATTCACTTCTGAGAACGCTGTCTTCTCTCCAGAGTCCCCCGGTACAAGTTCATTAATGGCAAAATGTGACAACACAGGGGATAATCCCAGAGGAAAGGAGGAACTTCAGCCTAAAGGTTTTCTTTGCTGCTTCAGTCAGTGTTATTAA 1059 0.4306 MESGGRFYSVDDFRLDAKWLIDPKQIYVGPRIGEGAHAKVYEGKYKNQTVAIKILHKGETTEDIAKREARFAREVEMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDIHVAIGFALDIARAMECLHSHGIIHRDLKPENLLLTEDQKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEELAAILTLCWQEDPNARPNFTQIIQMLLNYLYTISPPAPTIPSRIFTSENAVFSPESPGTSSLMAKCDNTGDNPRGKEELQPKGFLCCFSQCY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0642 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0642 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Glsi02g0642 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Glsi02g0642 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Glsi02g0642 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Glsi02g0642 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Glsi02g0642 352 CDD STKc_MAP3K-like 32 286 - -
Glsi02g0642 352 Gene3D Transferase(Phosphotransferase) domain 1 107 295 - -
Glsi02g0642 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Glsi02g0642 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0642 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Glsi02g0642 352 SUPERFAMILY Protein kinase-like (PK-like) 18 314 IPR011009 -
Glsi02g0642 352 FunFam serine/threonine-protein kinase HT1 107 307 - -
Glsi02g0642 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Glsi02g0642 352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 21 286 - -
Glsi02g0642 352 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0642 Glsi-ChrGlsi02 4181935 4185026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0642 9 352 MAP Kinase Kinase Kinase AT5G50180 79.651 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi02g0642 PK_Tyr_Ser-Thr 4.5e-59 CL0016