Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0635 ATGATTAGCATTTTATACTTTAAGCTGAATTTCTGTCTTCATTTTCTGCTTCTTAATACCTTCAACGTAGTCGTCAAAATCGAGTCTCTCCAATGTGGAGACCTGAATCAAATACGTGTCATAGCAAAGATTAAAGCTTTGGAGGAGGACCCGGGGAGACCTCAAATAATCGATGCACGAAATGCCAATGCTGTGGTTGAGCTTCAATATCCTCCACTTCTCCTCTATCCCCCCATTTCCAAGACCTTGAGGAGCCCTCTCCGAAGCGATTCTTCAATGGCAATTTCTTCAGCAGCAGCCTCAGCTTCCTCAAAGCTCGTATTCCCACATGCATCTCCGTCTCCATCTTCCTCCTCTTCCACTTCCCTTTCTGTGTCATCCTCCACCGTCACCACCGCCAGCTCGAGCTCCCCAACCTTCCTCTCCAAGCACAGACTGGCGATACCCACAACCCATCTCTCCTCATCCTTCATTAACCCTTCCACAATTCTCCATCTTACACCTTCTACCTCCTCCGGCACTACTCGCCAACGCTCTTTCACAATTCGAGCTGCTCGTGGTAAGTTCGAGCGGAAGAAACCCCATGTAAATATCGGTACAATTGGCCATGTCGACCATGGAAAGACTACTCTTACTGCTGCTCTCACCATGGCCTTGGCGGCATTAGGCAACAGTGCCCCCAAGAAGTATGACGAAATTGACGCTGCCCCTGAAGAGCGAGCTCGTGGAATCACCATTAATACTGCCACAGTAGAGTACGAGACTGAGAACCGCCATTATGCCCATGTCGACTGTCCTGGCCATGCAGATTATGTCAAGAACATGATCACCGGTGCCGCTCAGATGGACGGGGCAATTCTTGTTGTGTCTGGCGCCGATGGACCAATGCCGCAGACTAAGGAACACATCCTTTTGGCTAAGCAAGTCGGTGTGCCGAACATGGTTGTGTTTCTGAATAAGCAAGACCAGGTTGATGATGAGGAGCTTCTTCAGCTTGTGGAATTGGAGGTTCGTGAGCTACTTTCATCTTATGAATTCCCTGGGGATGATGTCCCCATCATTTCTGGTTCCGCTCTGTTAGCTTTGGAAGCATTGATGGCGAATCCTGCCATTAAACGTGGTGACAATGAGTGGGTGGATAAAATTTATGAACTTATGGATGCTGTGGATAGCTACATCCCAATTCCTCAGCGTCAAACTGATCTTCCCTTCTTACTTGCCATTGAAGACGTGTTTTCAATCACAGGTCGTGGAACTGTGGCCACAGGGCGTGTTGAAAGAGGTACAATTAAGACTGGAGAGACCGTAGATATAGTTGGTTTGAGGGACACTAGAAATACTACCGTGACTGGGGTAGAAATGTTTCAGAAGATTCTGGATGAGGCCATAGCTGGAGATAATGTGGGATTGTTGCTCAGAGGTGTCCAGAAGGCTGATATACAGCGAGGAATGGTTTTGGCTAAGCCAGGAACCATTACCCCACATACCAAATTTGTTGCAATTGTTTATGTGCTGAAGAAGGAAGAAGGAGGCAGGCATTCGCCATTCTTTGCTGGTTACAGGCCACAATTCTACATGAGGACCACTGACGTGACTGGGAGAGTGGCGTCAATTATGAATGACAAAGATGAAGAGTCGAAGATGGTGATGCCTGGAGACCGTGTGAAGATGATTGTGGAACTTATAATGCCTGTAGCGTGTGAGCAAGGAATGAGGTTTGCTATCAGAGAAGGTGGAAAGACTGTTGGAGCTGGTGTTATCCAATCTATCGTTGAGTAA 1779 0.4755 MISILYFKLNFCLHFLLLNTFNVVVKIESLQCGDLNQIRVIAKIKALEEDPGRPQIIDARNANAVVELQYPPLLLYPPISKTLRSPLRSDSSMAISSAAASASSKLVFPHASPSPSSSSSTSLSVSSSTVTTASSSSPTFLSKHRLAIPTTHLSSSFINPSTILHLTPSTSSGTTRQRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPAIKRGDNEWVDKIYELMDAVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKTGETVDIVGLRDTRNTTVTGVEMFQKILDEAIAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFVAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVASIMNDKDEESKMVMPGDRVKMIVELIMPVACEQGMRFAIREGGKTVGAGVIQSIVE 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0635 592 CDD EF_Tu 194 396 IPR041709 -
Glsi02g0635 592 Pfam Elongation factor Tu domain 2 418 486 IPR004161 GO:0005525
Glsi02g0635 592 Gene3D Translation factors 399 527 - -
Glsi02g0635 592 PANTHER ELONGATION FACTOR TU-RELATED 181 591 - -
Glsi02g0635 592 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 193 397 IPR000795 GO:0003924|GO:0005525
Glsi02g0635 592 Pfam Elongation factor Tu GTP binding domain 193 394 IPR000795 GO:0003924|GO:0005525
Glsi02g0635 592 Gene3D - 185 396 IPR027417 -
Glsi02g0635 592 Hamap Elongation factor Tu [tuf]. 184 592 IPR004541 GO:0003746|GO:0005525|GO:0006414
Glsi02g0635 592 Gene3D Translation factors 531 591 - -
Glsi02g0635 592 FunFam Elongation factor Tu 184 396 - -
Glsi02g0635 592 NCBIfam elongation factor Tu 185 592 IPR004541 GO:0003746|GO:0005525|GO:0006414
Glsi02g0635 592 NCBIfam small GTP-binding protein domain 196 328 IPR005225 GO:0005525
Glsi02g0635 592 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 234 249 IPR031157 -
Glsi02g0635 592 SUPERFAMILY Translation proteins 398 494 IPR009000 -
Glsi02g0635 592 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 491 591 IPR009001 -
Glsi02g0635 592 CDD EFTU_III 493 587 - -
Glsi02g0635 592 PRINTS GTP-binding elongation factor signature 197 210 IPR000795 GO:0003924|GO:0005525
Glsi02g0635 592 PRINTS GTP-binding elongation factor signature 277 288 IPR000795 GO:0003924|GO:0005525
Glsi02g0635 592 PRINTS GTP-binding elongation factor signature 261 271 IPR000795 GO:0003924|GO:0005525
Glsi02g0635 592 PRINTS GTP-binding elongation factor signature 241 249 IPR000795 GO:0003924|GO:0005525
Glsi02g0635 592 PRINTS GTP-binding elongation factor signature 314 323 IPR000795 GO:0003924|GO:0005525
Glsi02g0635 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 419 IPR027417 -
Glsi02g0635 592 Pfam Elongation factor Tu C-terminal domain 491 590 IPR004160 -
Glsi02g0635 592 CDD EFTU_II 404 490 IPR033720 -
Glsi02g0635 592 FunFam Elongation factor Tu 531 591 - -
Glsi02g0635 592 FunFam Elongation factor Tu 399 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0635 Glsi-ChrGlsi02 4157270 4159936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0635 191 590 Eukaryotic Initiation Factors Gene Family AT5G60390 30.357 9.21e-46 166