Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0624 ATGAAGAAGACGAAAGCTCTAGTTAGAATCAAAGAAGCAATAGTGATTGCTAGTTTTGTTGTACCATTCCAATTGTTCACTTTGTGGTTTTGCATGAGATTTTCTTTGACCAATTCATTTAAGGGGATGGAAAACAGAATTATAAATCTGCTCAAATTGAGGAAGCAAGTGAAGGATCTCCTTGATCGAAGACATTTTTGTTTTCTCATATCAATTTTTCTCTCGCTTTCTTCTGTTTATCTTGGAATCATGGAGATGGAGCGCGTCTTTGAATTTCCTCATACTCACATGGATCGGCGCCCAAGAAAGAGGGCGCGTTTGGGCTGGGACATCCCTGAGGCCCCAAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGAGTTTTTCAAGCTATGCACCTTCAAGGGGACCCTCAGAACATACCACTATTTCTCTAAATGTTAAGGGAGTTGCACGAAATGGTTCTCCCCCATGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAGAATTTAACTTCTCGCTATAAGATCCATGGCAAAATGGGTGAAGGAACATTTGGGCAAGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAGATGGTGGCAATAAAAATTGTCCGTGGGATAAAAAAGTATCGAGAAGCAGCCATGATAGAGATTGAGGTGCTGCAACAGCTTGGGAAACATGATAAAGGTGGCAATCGTTGTGTACAATTACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTACCGCTCATTTCCCATTGATCTTGTTCGCGAGATTGGCAGACAACTATTGGAAAGTGTAGCATTCATGCATGATCTGCGCATGATCCATACTGACTTGAAGCCAGAAAACATACTTCTAGCTTCACCAGATTATGTTAAAGTTCCTGACTACAGGAGTTCTTCCAGATCTCCAAGTTCCTATTTCAAGAGAGTGCCAAAGTCAAGTGCTATCAAGGTTATTGATTTTGGTAGCACCACATATGAGCGACAAGATCAAAGTTACATTGTATCAACACGGCATTATAGGGCACCTGAAGTTATCCTTGGACTTGGATGGAGTTATCCCTGTGACATATGGAGTGTGGGTTGTATATTGGTTGAATTATGCACGGGTGAAGCGCTGTTTCAGACTCACGAGAATTTGGAGCACCTTGCCATGATGGAGAGGGTGCTTGGTCCGTTACCTCAACACATGTTGAAGAGAGTAGACCGACATGCTGAGAAGTATGTTAGAAGGGGTCGATTGGACTGGCCGGAGGGAGCAACCTCTAGGGATAGTATTAAAGCAGTAATGAAGCTTGCTCGACTGCAGAACCTGATAATGCAGCACGTGGATCATTCTGCCGGAGATTTCATACATCTATTGCAAGGGTTACTTAGATATGACCCTTCTGAAAGAGCGACAGCCAGGGAGGCCCTGAGACATCCATTCTTTACAAGAGATCATCTTAGGAGGTGA 1542 0.4313 MKKTKALVRIKEAIVIASFVVPFQLFTLWFCMRFSLTNSFKGMENRIINLLKLRKQVKDLLDRRHFCFLISIFLSLSSVYLGIMEMERVFEFPHTHMDRRPRKRARLGWDIPEAPKAQVGLFCGQDVGSFSSYAPSRGPSEHTTISLNVKGVARNGSPPWRDDDKDGHYMFALGENLTSRYKIHGKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQLRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLESVAFMHDLRMIHTDLKPENILLASPDYVKVPDYRSSSRSPSSYFKRVPKSSAIKVIDFGSTTYERQDQSYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGRLDWPEGATSRDSIKAVMKLARLQNLIMQHVDHSAGDFIHLLQGLLRYDPSERATAREALRHPFFTRDHLRR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0624 513 FunFam Serine/threonine-protein kinase AFC2 168 261 - -
Glsi02g0624 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Glsi02g0624 513 SMART serkin_6 181 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0624 513 SUPERFAMILY Protein kinase-like (PK-like) 168 510 IPR011009 -
Glsi02g0624 513 FunFam Serine/threonine-protein kinase AFC2 257 506 - -
Glsi02g0624 513 ProSiteProfiles Protein kinase domain profile. 181 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0624 513 Gene3D Phosphorylase Kinase; domain 1 168 261 - -
Glsi02g0624 513 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 84 509 - -
Glsi02g0624 513 CDD PKc_CLK 168 506 - -
Glsi02g0624 513 Gene3D Transferase(Phosphotransferase) domain 1 235 506 - -
Glsi02g0624 513 Pfam Protein kinase domain 181 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0624 Glsi-ChrGlsi02 4065295 4071099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0624 186 506 Core Cell Cycle Gene Families AT1G76540 25.301 3.33e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Glsi02g0624 Pkinase 1.1e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0624 02 4065295 4071099 Glsi02g0624 02 4065295 4071099 ECH