Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0617 ATGAATTCGTGGGCAGAGTGTGTCCAAACAAAATCCTTCGTTCTTCTGTTCCTTATCCTCAACCTTCTTCTTCTAAACCCTCCTTCTCCTCCTCTACTTCTGGTCCTCGAAGATAGAAAGATGTCTATCACATCTATACCTTCGTTTAAGACCCTCTCAAGGGCAGAATCACGCCTTCTCTCGTTGCCCTCCCTCATCGCCAACAAAATCAAATACCCTCTTATCTCTATTCCTTCTAAACCCCTTCAACTGCAGGTCTCATGCTCCAATTTCTCACTTTTTTTACCATCTCTGTCTCTGTGTAGGAAAACCCACCATTTATCTATACTCACATTTGTAGCCCAGACTTCAGACTGGGCTCAACAAGAAGGAGACAACACTGTCATCATAGGAGAAGAAGAAGCAGAGCAAGATGAACCCACATGGGAAAATCAAGACGTCGATGCCGAAGCTGGTCTTTCAGATTGGGAGCCTGAGGGTGAAGGCGCAGTGATTGAGGGTAGCGAGGGCGAGGGAGAGAGTACTGAAGATGAGTTTTTTAAGGATAGGGAATTTTCAGAACCGCCAGAAGATGCAAAACTCTTTGTTGGGAACTTGCCTTACGATGTTGATAGTCAAAAATTGGCCATGCTTTTTGAGCAGGCCGGAACTGTGGAAATTGCCGAGGTCATTTATAATAGGCAGACTGACCAAAGTCGCGGGTTCGGATTTGTAACGATGAGCACAGTTGAAGAAGCCGAGAAGGCCGTCGACAAATTCAACCGCTATGATTTAGATGGAAGACTGTTGACCGTTAATAAGGCTGCTCCAAGAGGAGCACAGCCTGAACGCCCACCTCGAACTTTTGAACCTGCCTTCAGAGTCTACGTTGGTAACTTGCCATGGGATGTTGATAATGGTCGGCTGGAGCAGATTTTCAGTGAACATGGTAAGGTTACGAGTGCTAGGATAGTCTATGACAGAGAGACTGGTCGATCTCGTGGTTTTGGCTTTGTCACATTGGCGAGTGAGACTGAAATGAATGATGCCATCGCTGCTCTTGATGGTCAGAGTTTGGATGGGAGGGCAATTAGGGTGAATGTTGCTGAGGAAAGGCCCAGGCGTAACTCCTTTTGA 1116 0.4651 MNSWAECVQTKSFVLLFLILNLLLLNPPSPPLLLVLEDRKMSITSIPSFKTLSRAESRLLSLPSLIANKIKYPLISIPSKPLQLQVSCSNFSLFLPSLSLCRKTHHLSILTFVAQTSDWAQQEGDNTVIIGEEEAEQDEPTWENQDVDAEAGLSDWEPEGEGAVIEGSEGEGESTEDEFFKDREFSEPPEDAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRQTDQSRGFGFVTMSTVEEAEKAVDKFNRYDLDGRLLTVNKAAPRGAQPERPPRTFEPAFRVYVGNLPWDVDNGRLEQIFSEHGKVTSARIVYDRETGRSRGFGFVTLASETEMNDAIAALDGQSLDGRAIRVNVAEERPRRNSF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0617 371 PANTHER OS02G0815200 PROTEIN 88 367 - -
Glsi02g0617 371 MobiDBLite consensus disorder prediction 153 181 - -
Glsi02g0617 371 SMART rrm1_1 193 266 IPR000504 GO:0003723
Glsi02g0617 371 SMART rrm1_1 287 360 IPR000504 GO:0003723
Glsi02g0617 371 SUPERFAMILY RNA-binding domain, RBD 188 280 IPR035979 GO:0003676
Glsi02g0617 371 CDD RRM2_NsCP33_like 287 362 - -
Glsi02g0617 371 SUPERFAMILY RNA-binding domain, RBD 277 369 IPR035979 GO:0003676
Glsi02g0617 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 364 IPR000504 GO:0003723
Glsi02g0617 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 358 IPR000504 GO:0003723
Glsi02g0617 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 263 IPR000504 GO:0003723
Glsi02g0617 371 FunFam 31 kDa ribonucleoprotein, chloroplastic 276 370 - -
Glsi02g0617 371 FunFam 31 kDa ribonucleoprotein, chloroplastic 114 275 - -
Glsi02g0617 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Glsi02g0617 371 Gene3D - 276 370 IPR012677 -
Glsi02g0617 371 Gene3D - 121 275 IPR012677 -
Glsi02g0617 371 CDD RRM1_PSRP2_like 193 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0617 Glsi-ChrGlsi02 4025043 4027995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0617 190 368 Eukaryotic Initiation Factors Gene Family AT3G16380 33.511 6.55e-21 92.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0617 02 4025043 4027995 Glsi13g1360 13 30830017 30835224 CCT
Glsi02g0617 02 4025043 4027995 Glsi13g1360 13 30830017 30835224 ECH
Glsi02g0617 02 4025043 4027995 Glsi02g0617 02 4025043 4027995 ECH