Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0608 ATGACCATCCCTTCACTAACTTCTTCCCTCTTGTTCCTCTTCTCTCTTCTCCTTCCAACCCTCATTTCCTCTTCCCCTGTTCTTCAGGACCCAGAATTGGTTGTCCAAGAGGTCAATAGGAAAATTAATGCCTCTGTGGCTAGGAGGAACTTGGGGTACCTGTCCTGCGGGAGTGGAAACCCCATTGACGATTGCTGGAGGTGCGACCCCAACTGGAGCACGAACAGGCAAAGGCTGGCCGATTGTGCAATTGGGTTCGGCAAGAACGCCATTGGGGGAAAAAATGGTAAGATATACGTGGTGACGGACGCCGGTGATTATGACCCGGTGAACCCGAAGCCGGGGACTCTCCGGTACGCGGTGATTCAAGACGAGCCATTGTGGATCATATTCGCGAGAGACATGGTGATTAGGTTGAAGGAAGAGCTGATCATGAACTCCTTCAAGACCATCGATGGGAGAGGCGCGAGCGTACACATTGCCGGTGGTCCATGCATTACTATCCAATACGTGACCAACATCATAATTCATGGGATACACATACACGACTGTAAGCAAGGAGGGAATGCTATGGTGAGGGACTCCCCACGGCATTATGGGTGGAGGACCGTATCGGACGGTGATGGGGTGTCCATCTTCGGAGGAAGCCACGTGTGGGTGGACCATTGCTCCCTATCCAATTGCAACGACGGGTTGATCGATGCCATTCACGGGTCCACGGCTATTACCATTTCCAACAATTACATGACGCACCATGATAAGGTGATGTTGTTGGGTCACAGCGATTCTTACACCCAAGACAAGAACATGCAAGTCACCATAGCTTTCAACCATTTTGGAGAAGGCCTCGTTCAAAGAATGCCCAGATGTAGGCTTGGATATTTCCATGTGGTGAACAATGACTACACCCACTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAACAGATTTGTTGCGCCCGATATCAGATTCAGCAAAGAGGTGACAAAGCACGAGGATGCGCCAGAGAGTGAATGGAAGAATTGGAACTGGAGGTCCGAAGGGGACTTGCTTGTAAACGGTGCGTTTTTCACGGCATCAGGTGCCGGAGCCTCCTCTAGTTATGCAAGGGCTTCCAGTTTAAGCGCACGACCGTCTTCCCTTGTCGGTTCTATAACCATGGGTGCGGGTTCACTCAACTGTAAAAAAGGTTCTCGCTGCTGA 1227 0.5069 MTIPSLTSSLLFLFSLLLPTLISSSPVLQDPELVVQEVNRKINASVARRNLGYLSCGSGNPIDDCWRCDPNWSTNRQRLADCAIGFGKNAIGGKNGKIYVVTDAGDYDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDIRFSKEVTKHEDAPESEWKNWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITMGAGSLNCKKGSRC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0608 408 PANTHER PECTATE LYASE 18-RELATED 27 406 IPR045032 GO:0030570
Glsi02g0608 408 Pfam Pectate lyase 144 325 IPR002022 -
Glsi02g0608 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Glsi02g0608 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Glsi02g0608 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Glsi02g0608 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Glsi02g0608 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Glsi02g0608 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Glsi02g0608 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Glsi02g0608 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Glsi02g0608 408 SUPERFAMILY Pectin lyase-like 38 402 IPR011050 -
Glsi02g0608 408 Gene3D - 59 401 IPR012334 -
Glsi02g0608 408 FunFam Pectate lyase 59 401 - -
Glsi02g0608 408 SMART amb_all 134 331 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0608 Glsi-ChrGlsi02 3992800 3994376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0608 6 408 Polysaccharide Lyase AT5G63180 81.481 0.0 679