Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0607 ATGCCCTGCCTAACACCCCCTCCCATTTATGACATTTACTACTTTGCCACTTCCTCCTCTTCTTCTCTATCTGCCCCTATCACAGTTCATCTAAGCTACCCATTACCAGGCTCCATCACCAAGGCCTTTCTTTCCAACTTAGGGTTTCTCAGCATCGTCCCGCTTTCTACGCTGCCTCTCTTCCATGTTTTCTTCGTCACTTTCGAAGAATATGCTTGTTTCTATTTGCTGACGATGATGGATGGGAGGCGGCATTCAGTTGACATTCCTATTTCAAAAACTCTTGTAGCGTTGAGGAGAGTCAGGTCATTGAGGGATCCATCAACGAATTCTATGAGCAAACTCTGTTCTTCCATTGATAATGTACACTGGGAAAACAGTTCTGGTAATGGGATTTCTCTGCGGTTCTTGGATGCTTCTCGTGCATGTGTATCTGATGATAATGGTACTTTAAGTTCAAAGAATTTAAATTTTAGGCCGCACAGAGAGCGCGATGCTGCTGATTTTGCACTTTTCAGCTCTAAGCTGAAGTCTTGTCCCGAAGGGCAGCAGGATGATGAACTAGTTGACTCTAATTTGAATCGGGAGGGCATTTCTGGAAATAAGTCACCAAGTGAAAGCTGTTATAGCAACCATAGAGGTAACGAATTGGCTTTAGCAAGCATCATGCCTCCTAATAATTGTTTGAAGGATGGTGAATCATGTTATCAAGCTACAGTAGATACTGTTGGATCATCACAGTTAAGGAGAACAGACCATTCTAATTTAACCAGAAAAACTCTATGCAATAATCAAGTGAAACCATCTGAAATAATGGGTGATATTGCAATTCTTACAGGTAGTCCTTGTCTGTCTGTTGGTGACGCAGAGGTTCTCTCAGCCTACTGTTCATCAATAAATATAAATCAAGATGTTGATGTTGGAGATAATGATCACCGTGGATGTGGTATAAGCTGTTGTTGGTCAAAATCACCAAGGTTTAGAGAATCAAATCTCTATTCTGACATAGAGGACCGTCCATTGATATCCCAGCATGCTGATGAGATAGCTCTTTATGGACATAAAAGAATGAGACACATTGGTGGTGAAGTCAGTCCGAATTTGGAAACGCCTAGGAGTTTAAGCATGAAATTCAGGCCAAAATCTTTTAATGAGATGGTTGGACAAAATGTGGTGGCAAGGTCTCTTTTAGGTGCCATCTCTAAAGGAAGGATAACCTCATTCTATCTCTTCCATGGTCCTCGTGGTACAGGCAAGACCTCTGCCTCCAGGATTTTTGCTGCTGCACTGAATTGTCTCTCTCTTGAGGAGGAAAGGCCATGTGGTCTGTGCAGAGAGTGTGTTTTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGTATAGACAAGGTAAAATCCCTGGTTAAGAGTGCATGCATCCCTCCGGTTTCCTCGCGTTTTAAGGTTTTTATTGTTGATGAGTGCCAGCTGATACATGGGGAAATATGGGCGAGTCTTTTAAATAGCCTAGAGAACCTTTCTCAACATGTTGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCCCGAAGTGCAGTTTCTCGGGCCCAGAGATATCACTTTCCAAAGATAAAAGATGCTGACATTGCAAGCAGATTGGAAAAAATTTGTGTCGAAGAAGGTCTTGATTTTGAGCAGGTTGCTTTGAACTTCATTGCTGCTAAATCCTTTGGTTCGCTTAGGGATGCAGAAATCATGCTTGATCAGCTGAGCTTACTTGGTAGAAAAATAACAATTTCCCTGGCCTACGAGCTTACAGGGATCGTTTCTGATGATGAATTGCTTAATTTGCTGGATCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCCCGAGAGCTAATGAGATCAAGGGTGGACCCTTTGCAGCTTATATCACAGCTTGCAAATCTCATTATGGACATTCTTGCAGGGAAATGTGGCGATGGTGGTTCTGAAGTCAGAAGGTGGTTTTCTAGTAGACATAATTCTGAAGCAGACCTGCAGAAACTAAATCATGCATTAAGAACACTCTCTGAAACCGAGAAACAATTGAGAATTTCAAAGAATCAAACAACATGGTTCACCGTAGCTCTTCTACAGTTAAGCTCAGCAGAATATTCTTCTGTGGAAGAAAATGATACCAAATTGGGTTTGAGAGACGCATGCAATGGAGATGGTGATTTCTGCAGTACATCATCTTCAGTGGAAAGCATGAGGCATCTAGCCACAGGTCAGTGTGATGACAAGTCATATAGATTAGGAGTGCAGCAGGATCACAAAGGAACATTAAATTCCATATGGTATAAAGCCACAGAGTTATGTCAATCTAACAGGCTCAAGACTTTTCTCAGGAAACAGGGGAAGTTGTCTTCGCTTTGCGTTAATCAAGGTCTTGCAATTGCCGAGTTGGAGTTCCACCATCGCGACTACGTATCTAGGGCTGAGAAGTCATGGAAACTGATTGCTAACTCCCTGCAGTTCATATTGGGTTGTAACATAGAGCTCAGGATAAATCATGTACCCTGTACTTCTGATTCTAAGTATGCCAAATTGAAGAGGTCATCTTTCAGTTTTTTCAGTTGTTCCCGTAGAATGCGCCAGAAATCATTCTTGTCTAATGAACGAGGAAGTGAACCAGACCCCGCTGATTACACTTCTATAAAACCCATGATGAAGGATAGAACTCTAACTTGTACCTCTGATTGTGGATCTCAGGTGCCACAACCTGAGTCCTACCATAGAACGGAGGTTGTAACGGCATTGAGAAACAGTGAAGGGAATTTGCTGAGCTCAAAGAAAAGCTTGTTGAATGGGTCATGTCAAGAGACTTCAAGGACATCAAGTTCTGGAGTTGATTCCTCTAAGGAAGAGGGATGTGATTATGCACGTCTAGTTTCATCAGTCCCCAGTTCAGACAATCAGTCAAAATGTTTTCCTCGGACTCTCTGGCTTCATAAAAAGAAGTTGCCTTCTCCAGATCTATCCCAGTTGATTTTCCAGGGCCCCCAACAACAGAAAGATCTCGTTTTGTCTATCTCAAACTACGCATGTTCTGAGACATATAGCTTTGCTGGTGAACCTTGTGTTTTCTCCAGCAGTTCTAACAACTGTACCAAAGCCGCCAGAAATGAGGAAAGCCCAAAGGTGGATTCAGATTTGCTTTGTTGGAGAACCCCCACATCTCCCTTGAGGAAGGCTGACACTCCCTCCCTGATGGAGTTATGGTTGCAGCCAAGCTTGCTGTTGTGTGTGGATATGAAGATGATGTTGGCAACGGTTCTGCTGCTGCTGCTGTCATCGTTTGTGACGCAAGTTGATCCAATTTGTACTCTTCACCAGGTAACGGTGGAATTTCAATCAATGGAGAGCGTGAGAATTCTATGCCCAAAACTCGTACTCCACAATGCAGAGTCTGGTCCCGCGATCCACTGGCTCGTCGGATCCCCCTTTTTCCCGCCTCTCACCATCGTCTCCTCCCTCGGATGCATCCACACCCTACCTTCCTCCGACTCTTCTTCCCCAGATTTACACCAAGAATCAGAAGAACTTCGGACCTTGATAATAAAAGGATTTGAAATAATCGGAGCACTAACTTCTGCAAACTCCGATGTGGAGAAAAATGCTCGTAAGTGCATAGATGCAGCTCGTGGATTAAGGAAGCGTCTTTACGGCGAAGGGAGATGGGAAAATCAACTTTTGGTTGGAGCAGTTGCAGGTTTAGATACCAGTGACATACGATTTTTCGTCTCCAAGAGTGGACATGAAACAAGTCTTGAACCTGTTACGTCAATTACATACGAAGATCATCCCGAGAAGTATGTTTGGGAGAAAGGTTGTTTGCTTCGGTGTGAACTTCCAGTCAAGTTGCCAGTGTATTACCCCGTAAACAATCCTCTTGATGTTGAGAAAGCATATTCTCGTGCAACTGAAGCTGTTATTGCCCAGTTAAGAGACCCACAGTCGTTGTATATGTTAGAAACATTAAGCAAGGCCACTATGGATCTACCGCCGCCAGCCATAATCCGAGGTGTACAATTAGCCTTTCTCACAGATCTCTCCAAGGTCAGGCTTTTGACAGTAGGAGATGATGGCTTTGATGCAAATTCACTATCATGTTCATACTTTTCCATCAAAAGTAAAGCAGACTTACCAATATTTTCTGTGGAGAATGCAGATAGTATCCAAGTTAGTGTTTTCTTTAATAGCTTAGAAAAATCTTCAACACCTGCTGCGCCAGTTGCTGAATATCTTCCAGCCCAGGAAGAAGCAAGACTTCTTGTAGTGGACATTAAGCTTGATGTACTCTGCTATGCTGCTAAGGAACTTCCATTGATAGATGCAGTTTCAAGTTTAATCATCCCTGGTTTAGTTGATCAGTTAAATACTCTGCAGAATTTAATTTTGCCCAACCTTTTGGCACGACATCCTCAGTTACATCCTTTTCACTTTAGTCCTCCTGGGGTTCTGCATCCGATAACTGTTTTCTATGAAGTGAGTTTTGGGGAGACAGAATTGAAGCAAGTTGAAGTTAGAAGAGCCTTACACTCAAGGCTAGGATTGCCTTATGATCGCCCCCTTCTAAGAATTGCTAATGCCTTGGATTTTTTAAGATTGAAGAATAGTGGGAGTGACTCTTCACACAAGGGATCAGCTTTGCTTAGAGATGTACATATTGGAATACCTAGCAGTGGGGTTACTGGGGGGGTCGTTTCCCTTGTACAAGGTTCCTATGAGTACCACCATTATCTTCAGGATGGTTTTAATGATTCGGGATGGGGTTGTGCTTATCGCTCTCTCCAGACTATCATCTCATGGTTCAGACTACAGAATTACACATCCATAGAAGTTCCTTCTCATAGGGAAATACAGCAGTCACTTGTTGAGATTGGTGATAAGGATCCCTCTTTTATTGGATCACGAGAATGGATTGGTGCCATTGAGTTGAGCTTCGTTTTGGATAAGCTTCTGGGTGTTACTTGCAAAGTCATCAATGTCAGATCTGGAGCTGAGCTTCCAGAAAAATGTCGAGAGCTGGCATTGCACTTTGAGAACCAAGGGACTCCTGTTATGATTGGTGGTGGAGTACTTGCGTATACACTCTTGGGAGTGGATTACAATGAAGCAAGTGGAGATTGCGCATTTTTAATACTTGATCCACACTATACAGGGACGGATGATGTGAAGAAAATAGTCAATGCGGGTTGGTGTGGGTGGAAAAAGGCTGTTGATAACAAGGGAAGAAATTTCTTCTTACATGATAAGTTCTATAATCTCCTGCTACCCCAGAGGCCTAACATGGTTTAA 5358 0.428 MPCLTPPPIYDIYYFATSSSSSLSAPITVHLSYPLPGSITKAFLSNLGFLSIVPLSTLPLFHVFFVTFEEYACFYLLTMMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLCSSIDNVHWENSSGNGISLRFLDASRACVSDDNGTLSSKNLNFRPHRERDAADFALFSSKLKSCPEGQQDDELVDSNLNREGISGNKSPSESCYSNHRGNELALASIMPPNNCLKDGESCYQATVDTVGSSQLRRTDHSNLTRKTLCNNQVKPSEIMGDIAILTGSPCLSVGDAEVLSAYCSSININQDVDVGDNDHRGCGISCCWSKSPRFRESNLYSDIEDRPLISQHADEIALYGHKRMRHIGGEVSPNLETPRSLSMKFRPKSFNEMVGQNVVARSLLGAISKGRITSFYLFHGPRGTGKTSASRIFAAALNCLSLEEERPCGLCRECVLFFSGRSKDVKEVDSVRINRIDKVKSLVKSACIPPVSSRFKVFIVDECQLIHGEIWASLLNSLENLSQHVVFVMITPDLDKLPRSAVSRAQRYHFPKIKDADIASRLEKICVEEGLDFEQVALNFIAAKSFGSLRDAEIMLDQLSLLGRKITISLAYELTGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRVDPLQLISQLANLIMDILAGKCGDGGSEVRRWFSSRHNSEADLQKLNHALRTLSETEKQLRISKNQTTWFTVALLQLSSAEYSSVEENDTKLGLRDACNGDGDFCSTSSSVESMRHLATGQCDDKSYRLGVQQDHKGTLNSIWYKATELCQSNRLKTFLRKQGKLSSLCVNQGLAIAELEFHHRDYVSRAEKSWKLIANSLQFILGCNIELRINHVPCTSDSKYAKLKRSSFSFFSCSRRMRQKSFLSNERGSEPDPADYTSIKPMMKDRTLTCTSDCGSQVPQPESYHRTEVVTALRNSEGNLLSSKKSLLNGSCQETSRTSSSGVDSSKEEGCDYARLVSSVPSSDNQSKCFPRTLWLHKKKLPSPDLSQLIFQGPQQQKDLVLSISNYACSETYSFAGEPCVFSSSSNNCTKAARNEESPKVDSDLLCWRTPTSPLRKADTPSLMELWLQPSLLLCVDMKMMLATVLLLLLSSFVTQVDPICTLHQVTVEFQSMESVRILCPKLVLHNAESGPAIHWLVGSPFFPPLTIVSSLGCIHTLPSSDSSSPDLHQESEELRTLIIKGFEIIGALTSANSDVEKNARKCIDAARGLRKRLYGEGRWENQLLVGAVAGLDTSDIRFFVSKSGHETSLEPVTSITYEDHPEKYVWEKGCLLRCELPVKLPVYYPVNNPLDVEKAYSRATEAVIAQLRDPQSLYMLETLSKATMDLPPPAIIRGVQLAFLTDLSKVRLLTVGDDGFDANSLSCSYFSIKSKADLPIFSVENADSIQVSVFFNSLEKSSTPAAPVAEYLPAQEEARLLVVDIKLDVLCYAAKELPLIDAVSSLIIPGLVDQLNTLQNLILPNLLARHPQLHPFHFSPPGVLHPITVFYEVSFGETELKQVEVRRALHSRLGLPYDRPLLRIANALDFLRLKNSGSDSSHKGSALLRDVHIGIPSSGVTGGVVSLVQGSYEYHHYLQDGFNDSGWGCAYRSLQTIISWFRLQNYTSIEVPSHREIQQSLVEIGDKDPSFIGSREWIGAIELSFVLDKLLGVTCKVINVRSGAELPEKCRELALHFENQGTPVMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGTDDVKKIVNAGWCGWKKAVDNKGRNFFLHDKFYNLLLPQRPNMV 1785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0607 1785 Gene3D - 367 544 IPR027417 -
Glsi02g0607 1785 Pfam DNA polymerase III, delta subunit 389 546 - -
Glsi02g0607 1785 NCBIfam DNA polymerase III subunit gamma/tau 373 719 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Glsi02g0607 1785 MobiDBLite consensus disorder prediction 194 208 - -
Glsi02g0607 1785 FunFam Probable Ufm1-specific protease 2 1568 1785 - -
Glsi02g0607 1785 PANTHER UFM1-SPECIFIC PROTEASE 2 1207 1785 - -
Glsi02g0607 1785 Gene3D - 1568 1785 - -
Glsi02g0607 1785 MobiDBLite consensus disorder prediction 180 208 - -
Glsi02g0607 1785 Pfam Peptidase family C78 1588 1777 IPR012462 -
Glsi02g0607 1785 CDD HLD_clamp_pol_III_gamma_tau 546 609 IPR045085 -
Glsi02g0607 1785 Gene3D - 547 609 - -
Glsi02g0607 1785 SMART AAA_5 405 565 IPR003593 GO:0016887
Glsi02g0607 1785 Coils Coil 678 708 - -
Glsi02g0607 1785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 595 IPR027417 -
Glsi02g0607 1785 FunFam DNA polymerase III subunit gamma/tau 547 609 - -
Glsi02g0607 1785 SUPERFAMILY Cysteine proteinases 1605 1742 IPR038765 -
Glsi02g0607 1785 SUPERFAMILY post-AAA+ oligomerization domain-like 610 721 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0607 Glsi-ChrGlsi02 3970561 3985245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0607 364 702 Core DNA Replication Machinery Family AT1G21690 25.073 1.55e-12 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0607 02 3970561 3985245 Glsi02g0607 02 3970561 3985245 ECH