Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0601 ATGATGGCGGGTTCAGCAGCTCTGGCATCAGAGCCAAACGCAGAGGTATTTTCATGGCTGAAATCTCTTCCTCAAGCTCCAGAATACCACCCAACTTTGGCTGAGTTCCAAGATCCGATTTCATACATTTTTAAAATCGAGAAGGAAGCTTCCAAGTATGGAATCTGTAAAATTGTTCCTCCTGTGCCGCCTTCACCCAAAAAGACAGCAATTGCGAATCTTAATCGCTCGTTGGCGGCACGAGCTGCTTCCTCTGACTCTTCTAATTCGAAATCTCAGCCTACATTTACCACAAGGCAGCAACAGATCGGGTTCTGCCCTCGGAAGCCACGGCCCGTGCAGCGTCCCGTGTGGCAGAGTGGTGAATACTACACGTTTCAGGAATTCGAAGTGAAGGCCAAGGCTTTTGAGAAGAATTATCTTAAGAAATTTGCCAAGAAAGGTGGGTTCTCGCCACTGGAAATAGAAACTCTTTATTGGAAGGCGACAGTGGACAAACCCTTTTCAGTGGAGTACGCAAATGACATGCCTGGTTCGGCCTTTGTTCCCGTGAATGGGCGAAAATGTAGAGAGGCAGGGGAGGGTGTGACTCTTGGTGAGACTGCATGGAACATGAGGGGGGTGTCAAGGGCAAATGGCTCTTTGTTGAGGTTTATGAAGGAGGAGATTCCGGGTGTTACATCCCCGATGGTGTATGTAGCTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGACTTGCATAGCTTGAATTACCTCCATATGGGGGCAGGCAAGACGTGGTATGGAGTGCCACGGGATGCAGCGGTCGCATTCGAGGAAGTGGTCAGAATTCATGGGTATGGAGGAGAAATAAACCCTCTTGTTACTTTTGCTATACTGGGTGAGAAAACCACAGTTATGTCGCCTGAAGTATTTATTAGCTCAGGGATTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACATTTCCAAGAGCCTACCACACTGGGTTTAGTCATGGATTTAATTGTGGGGAGGCAGCTAACATTGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGGTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTACCAGTTACTTTATGATCTTGCCCTAGCTTTGTGTTCCAGAATTCCTGGGGGCATCAGTGCTGAACCACGAAGTTCTCGACTCAAAGATAAAAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATGATCTGCTTCATGGACTTGGCAAAGGCTCTGCTATAGTACTTCTTCCTCGTAGCTCTTCAGATATTTCTGTTTGCTCACAATTACGTGTTGGATCCCAACAACTTAAGGTGAACCCTGGGTATTCCCTCAGTGCATGCAATTCTGAGGGAATGAATTCATCGAAAGTTTTTGTTTCTGATGACCTGGTGTTCAACAGGAGTTATGGAACCAAGCAAGTGAAAGGATTTTATTCAGTAAAAGAAAAGTTTGCTTCATTGTGTGAAAGGAACAGGGTTTCCTCGTTAAGTGTAAATGATAACATATGCTCTTCAAGTTCTAAGCCTCAGCAAAGCGACACTGAAAGAGAAACAAGTCAGGGGGATGGGTTGTCAGATCAGAGGTTATTTTCATGTGTCACATGTGGAATATTAAGCTTTGCTTGTGTTGCTATTGTACAGCCTCGGGAACCAGCGGCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTAAATGATTGGGTTGTTGGTTCTGGAGTAAGTAGAAATAAATTTACTATTGCCCATGGAGATGCAACTACTTCTGACAAAAGCACCTTTACAGGACGTGTGGAACAAAATGCCCCACGTAGTTTATATGACATTCCAGTTCAATCTGTTGAATACCAGATGCAGATTGCAGATCAATCTTATGAGGAAGCTTTACATACTAAAAGACAAAAAGACATTTCAGCGCTTGGCTTATTGGCATCAGCATATGGGAATTCATCTGATTCTGAGGAAGATCAGGTTGACCCAGATATTGCAGTTGACGGTGATGAATCGAATGTAATAAAAAGTCCATCGGAAAGTATATCTCAGAAGAGTATTGACAGCTATCAAGATTATATGCAGAGAGCCAAGTCTAAGAATAGGAGTCATCAGACTTTTGACCACACTGTCGACTCAGAAGGTGCTTCATTGTTGCCACAATCTGATGAAGACTCATCAAGATTGCATGTCTTCTGTCTAGAGCATGCTGCAGAAGTGGAGCAGCAACTTCGCCCAATAGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCAAAGATAGAGGATGAATCAAAGTTTGTGGCAGAAGAACTGGGGATTGATTACATATGGAAGAACCTTGCATACAGACATGCCACCAAAGAGGATGAGGAGAGGATCCAGTCAGCTCTGGATAGTGAGGAAGCTATTCCTGGGAATGCAGACTGGGCTGTGAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGCTCCCCCCTATACAGTAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGCCGTAGTTCCCCAGCAAGCCCAACCACAGAGCCCAAGGTCTATCAAAGAAGGGCCAGCAAGCAGAAAAAGGTGGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAAGTTCATCCCCTTTTAGCAAAAAGAGAGTCTGAAGATGGTGACGATGAGAAAAGCTTACATGGGAGGTTGTTACCCGATGTTAAAATTGAGAGATCAGAAAGTGCCCACAAAAACAATATTACTATTAGAAAATCTGGTGGGAAAAGGAAAATGACTGCAGAGAGTGGAGGAGCCAGGAAAGCGAGTTTTTCTGAGAGAGAATATGTACTTTCAGATAATTCAATTGAAGATAAATACAATGAACAACAAAAGAGAATTCCTAGAAGCAAGCAAGCCAGATATATTGAGAGAGATGATGTAGCTTCAGAAGGGGACTATTCTCCTCTGCAGCGTCATGGAAAACCTATGAGCAAGCAAACAAAATGCATTGAAAGTGAGGCAGACTCAGATGATTCACTGGATGATAATTCTCATATGCAGCATGGGAGGAATGTCAAATTCAGGGAACCTAAATTTATTGAGAGTGATGTGGTCTCAGATGATACAATTGGATATGATTCTGATTGGCAGCTGAGGGAAGAGCTTAGCAGTAAGCAAATCCGAGACTCAGAGAGAGATGCAATGTCAGAAGATTCATTGGGTGGTGGTTCTCTTAGGCTGCATAGGAAGACTCCTAAAAGCAAGCAAGCTAAATACATTGCTGAAGAAGATCCAATTTCTGATGATCAAATGGAGGATCATTTTCAGAAGCAGCAAAGGAGGATTCCTAAAAGTAGGAGAGTCAAATATCCTGTCAGAGAGGATATTATGGTATCTGATGACCAACTGGAGCGTCACATGCAGAAGCATCAGCGAAGGATCCCTAAAGGTAGGCAAGCCAAATACTTTGCTGCAGAGGATATTACGTCTGATGACCAACAGGAGGAACATTATCGCAAGTATCATAGAAGGATTCCTAAAAGCAGGCAAACCAAATGCCTAGTCGAGGAGGATGTAATGTCTGATGACCGATTGGAGGATCAGTTTCAGAAGCGGCAAAGGAGTGTTCCAAAAAGCAGGCAAAATAAACGGATGGATAAAGTTATGGTTGACTCAACTGAAAATCATTCTCATCTGCTGCATAGAACAACTAAAAGGAAGCAAGCGAAATGCATGGATGAAGACGATATAAATTCCGATGATCAAATGGAGGATTCGTCTCATCAGCAGCAACAGAGAATTCTTCGAAGCAAGCAAACTAAATCGGAGACACTTCAAGCAATGAAACAATCTAACCATCGCCATTTGAAAGATCAGACATCCCGACCTATAAAACGAGGTGCTCAGGTGCTAATGAAACCAAAGGCTTCTAAGCAAATGAAGCAGCCACCTCGAGTGCGGAATAATCAATCTAAGAACTGCAGAGAGTTTAATTTATGTATTGAAGAGGAGGAAGAAGGCGGACCTAGCACACGCCTTAGGAAGAGAGTTCCAAAAGTTCAGGATTCTGAAGCAAAATCAAAAGAAAAGCAAACCAACAGGAAAAAGGTGAACAATGCTACAGCGGTAAAGGTTTCAGCTGGCCATGCCAAAATAAAGGATGAGGAAGCAGAATACCAGTGTGACATTGAGGGGTGCACCATGAGCTTTGGCTCAAAACAGGAGCTTGTGCTGCATAAGAGAAACATCTGTCCTGTAAAGGGGTGTGGAAAGAAGTTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCATGTTGATGACCGCCCCTTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAATGGGCATGGGCTCGTACTGAACATATTCGAGTTCACACTGGGGCTCGTCCCTATGTTTGTGCTGAGACTGGTTGTGGGCAAACATTCAGATTTGTGTCTGATTTCAGTCGCCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAGTCGTTGA 4608 0.4364 MMAGSAALASEPNAEVFSWLKSLPQAPEYHPTLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSPKKTAIANLNRSLAARAASSDSSNSKSQPTFTTRQQQIGFCPRKPRPVQRPVWQSGEYYTFQEFEVKAKAFEKNYLKKFAKKGGFSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVNGRKCREAGEGVTLGETAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIHGYGGEINPLVTFAILGEKTTVMSPEVFISSGIPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDGAIRRASINYPPMVSHYQLLYDLALALCSRIPGGISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHGLGKGSAIVLLPRSSSDISVCSQLRVGSQQLKVNPGYSLSACNSEGMNSSKVFVSDDLVFNRSYGTKQVKGFYSVKEKFASLCERNRVSSLSVNDNICSSSSKPQQSDTERETSQGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFLNDWVVGSGVSRNKFTIAHGDATTSDKSTFTGRVEQNAPRSLYDIPVQSVEYQMQIADQSYEEALHTKRQKDISALGLLASAYGNSSDSEEDQVDPDIAVDGDESNVIKSPSESISQKSIDSYQDYMQRAKSKNRSHQTFDHTVDSEGASLLPQSDEDSSRLHVFCLEHAAEVEQQLRPIGGAHILLLCHPDYPKIEDESKFVAEELGIDYIWKNLAYRHATKEDEERIQSALDSEEAIPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSSPASPTTEPKVYQRRASKQKKVVAGKWCGKVWMSNQVHPLLAKRESEDGDDEKSLHGRLLPDVKIERSESAHKNNITIRKSGGKRKMTAESGGARKASFSEREYVLSDNSIEDKYNEQQKRIPRSKQARYIERDDVASEGDYSPLQRHGKPMSKQTKCIESEADSDDSLDDNSHMQHGRNVKFREPKFIESDVVSDDTIGYDSDWQLREELSSKQIRDSERDAMSEDSLGGGSLRLHRKTPKSKQAKYIAEEDPISDDQMEDHFQKQQRRIPKSRRVKYPVREDIMVSDDQLERHMQKHQRRIPKGRQAKYFAAEDITSDDQQEEHYRKYHRRIPKSRQTKCLVEEDVMSDDRLEDQFQKRQRSVPKSRQNKRMDKVMVDSTENHSHLLHRTTKRKQAKCMDEDDINSDDQMEDSSHQQQQRILRSKQTKSETLQAMKQSNHRHLKDQTSRPIKRGAQVLMKPKASKQMKQPPRVRNNQSKNCREFNLCIEEEEEGGPSTRLRKRVPKVQDSEAKSKEKQTNRKKVNNATAVKVSAGHAKIKDEEAEYQCDIEGCTMSFGSKQELVLHKRNICPVKGCGKKFFSHKYLVQHRRVHVDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAETGCGQTFRFVSDFSRHKRKTGHSAKKSR 1535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0601 1535 ProSitePatterns Zinc finger C2H2 type domain signature. 1445 1467 IPR013087 -
Glsi02g0601 1535 PANTHER LYSINE-SPECIFIC DEMETHYLASE 18 1469 - -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 1366 1396 - -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 82 103 - -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 1025 1051 - -
Glsi02g0601 1535 FunFam Probable lysine-specific demethylase ELF6 1500 1529 - -
Glsi02g0601 1535 ProSitePatterns Zinc finger C2H2 type domain signature. 1475 1497 IPR013087 -
Glsi02g0601 1535 ProSiteProfiles Zinc finger C2H2 type domain profile. 1503 1534 IPR013087 -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 1267 1288 - -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 1088 1119 - -
Glsi02g0601 1535 Pfam JmjC domain, hydroxylase 230 348 IPR003347 -
Glsi02g0601 1535 Gene3D Cupin 19 370 - -
Glsi02g0601 1535 ProSiteProfiles Zinc finger C2H2 type domain profile. 1443 1472 IPR013087 -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 1366 1397 - -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 1006 1051 - -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 1309 1323 - -
Glsi02g0601 1535 SMART cupin_9 197 366 IPR003347 -
Glsi02g0601 1535 ProSiteProfiles Zinc finger C2H2 type domain profile. 1473 1502 IPR013087 -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 527 550 - -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 1229 1328 - -
Glsi02g0601 1535 FunFam Probable lysine-specific demethylase ELF6 1470 1499 - -
Glsi02g0601 1535 ProSitePatterns Zinc finger C2H2 type domain signature. 1505 1529 IPR013087 -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 722 743 - -
Glsi02g0601 1535 SUPERFAMILY beta-beta-alpha zinc fingers 1443 1479 IPR036236 -
Glsi02g0601 1535 ProSiteProfiles JmjN domain profile. 26 67 IPR003349 -
Glsi02g0601 1535 SMART JmjN_1 25 66 IPR003349 -
Glsi02g0601 1535 Gene3D Classic Zinc Finger 1441 1527 - -
Glsi02g0601 1535 FunFam Probable lysine-specific demethylase ELF6 19 370 - -
Glsi02g0601 1535 Pfam jmjN domain 27 60 IPR003349 -
Glsi02g0601 1535 SMART c2h2final6 1420 1442 IPR013087 -
Glsi02g0601 1535 SMART c2h2final6 1503 1529 IPR013087 -
Glsi02g0601 1535 SMART c2h2final6 1443 1467 IPR013087 -
Glsi02g0601 1535 SMART c2h2final6 1473 1497 IPR013087 -
Glsi02g0601 1535 SUPERFAMILY Clavaminate synthase-like 212 361 - -
Glsi02g0601 1535 ProSiteProfiles JmjC domain profile. 200 366 IPR003347 -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 674 709 - -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 1289 1308 - -
Glsi02g0601 1535 SUPERFAMILY beta-beta-alpha zinc fingers 1483 1527 IPR036236 -
Glsi02g0601 1535 MobiDBLite consensus disorder prediction 1229 1260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0601 Glsi-ChrGlsi02 3936608 3945069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0601 1110 1534 C2H2 Transcription Factor Family AT3G48430 36.645 1.87e-70 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g0601 JmjC 3.2e-35 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0601 02 3936608 3945069 Glsi02g0601 02 3936608 3945069 ECH