Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0599 ATGGAGCCTTCTGAATCCGAATCAACTGCAGTTTCGAATTCTAATGAAGACCCAAAATTGGGCTTGCGGTCAGCACCATCTTTTCCTAGTTCCGATCACGATCCTGAAACGTCAGATCTTAATCACCGGGCTGAAGCCGATGCAATTCATGAGGAATTTCCGAAGAAGTTGAATTTGAAGGATAAGGATGAAGGGCGCGAGACACAGAAAAAAATTTCAGAATTTGATAATGGTGAAGAAGTATGTGATAAAGCTGGTGCTGTAGAATCTGGGGAGGGAGATGGCTGGGGTGAAGATAACAGGAATTGGAATGCAAATGAGGACAATAATTGGAATGAGAATGTGAACGACAAGGTAGGTAGAGATTTTGATGTAACTATCGATGAAGTGGAGAAGAAGGAAGAGAGAAGCAGTGGTATGACTCACCAATACCCGTTGAGGCCCGAAGCCGAAGATTGTGCATTCTATCTTAAGACTGGAACTTGCAAGTTTGGATTTTTCTGCAAGTTTAATCACCCTGTTAGGAGGAAAAGTCAGTCTGTTAAGGAGAAAGCAGGAGAAAGAGAAGAATCAGCAGATAGTTCAGGGCAGGCGGAATGCAAGTATTATCTAAGGTCAGGAGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCACACAAGAGGAACATGTTCAGCAGCCCCAATTCTAGAGCTCAACTTTCTTGGCTTGCCTATTCGTCTGGGCGAGAAAGAGTGCCCCTATTACATGCGTACTGGATCTTGTAAGTTTGGTGCAAACTGCAAATTTAATCACCCTGATCCTACAGCTGTTGGAGGATGTGATCCTCCTTCAGGATATGGTAATGGTGGATCCATGTCATTACAAGGTGTATCACAGCCATCTCTACCCTCCTGGTCTTCTCCAAGAAGATTAAATGAAACTGCTGCTTTTATGCCAATGGTGCTTTCACCTACTCAAGGGGTTTCTCCCCAAAGTTCTGAGTGGAATGCATTTCAGGCACCTGTCTACCTATCTGAGAGGAGTATGTATCCGCCTTCTACATATGTCATGAACAATCCAGCAATTGAAACAAACGTTTATATGCATCCTCAAAAGCAGATGCAGGTTGATGAGTTTCCTGAAAGACCTGGAGAACCTGAATGCAGTTACTTCTTAAAAACTGGAGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAGGAGTCGGATTGCAAAGTCGCCTTCATGCACCCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAGAATGTCTGCATGCATTACAGTCGCTATGGTATATGCAAATTTGGACCTGCTTGTAAGTTTGACCACCCAATAAACCCATTGCCCTCTGCTATACCTGGACTTGATCGACAGTCCTACTCAAACTCTGCTAGTGTAGAAGTGGCTGGGGTGGCAGGAAGTGGAGGTGCAAGTGATGCAATAATTCAGCAGTCTGTAAACATTTAA 1479 0.4348 MEPSESESTAVSNSNEDPKLGLRSAPSFPSSDHDPETSDLNHRAEADAIHEEFPKKLNLKDKDEGRETQKKISEFDNGEEVCDKAGAVESGEGDGWGEDNRNWNANEDNNWNENVNDKVGRDFDVTIDEVEKKEERSSGMTHQYPLRPEAEDCAFYLKTGTCKFGFFCKFNHPVRRKSQSVKEKAGEREESADSSGQAECKYYLRSGGCKFGKACKYNHTRGTCSAAPILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGGCDPPSGYGNGGSMSLQGVSQPSLPSWSSPRRLNETAAFMPMVLSPTQGVSPQSSEWNAFQAPVYLSERSMYPPSTYVMNNPAIETNVYMHPQKQMQVDEFPERPGEPECSYFLKTGDCKFKSNCKFHHPRSRIAKSPSCTLSDKGLPLRPDQNVCMHYSRYGICKFGPACKFDHPINPLPSAIPGLDRQSYSNSASVEVAGVAGSGGASDAIIQQSVNI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0599 492 MobiDBLite consensus disorder prediction 1 20 - -
Glsi02g0599 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 243 266 IPR000571 GO:0046872
Glsi02g0599 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 378 403 IPR000571 GO:0046872
Glsi02g0599 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 425 448 IPR000571 GO:0046872
Glsi02g0599 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 173 IPR000571 GO:0046872
Glsi02g0599 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 196 219 IPR000571 GO:0046872
Glsi02g0599 492 ProSiteProfiles Zinc finger C3H1-type profile. 240 268 IPR000571 GO:0046872
Glsi02g0599 492 ProSiteProfiles Zinc finger C3H1-type profile. 194 222 IPR000571 GO:0046872
Glsi02g0599 492 SUPERFAMILY CCCH zinc finger 423 451 IPR036855 GO:0046872
Glsi02g0599 492 MobiDBLite consensus disorder prediction 35 87 - -
Glsi02g0599 492 MobiDBLite consensus disorder prediction 1 117 - -
Glsi02g0599 492 PANTHER PROTEIN PHOSPHATASE RELATED 6 468 - -
Glsi02g0599 492 SUPERFAMILY CCCH zinc finger 241 267 IPR036855 GO:0046872
Glsi02g0599 492 SUPERFAMILY CCCH zinc finger 381 405 IPR036855 GO:0046872
Glsi02g0599 492 Gene3D - 184 270 - -
Glsi02g0599 492 ProSiteProfiles Zinc finger C3H1-type profile. 376 404 IPR000571 GO:0046872
Glsi02g0599 492 SMART c3hfinal6 194 221 IPR000571 GO:0046872
Glsi02g0599 492 SMART c3hfinal6 240 267 IPR000571 GO:0046872
Glsi02g0599 492 SMART c3hfinal6 147 174 IPR000571 GO:0046872
Glsi02g0599 492 SMART c3hfinal6 376 403 IPR000571 GO:0046872
Glsi02g0599 492 SMART c3hfinal6 422 449 IPR000571 GO:0046872
Glsi02g0599 492 Gene3D - 114 183 - -
Glsi02g0599 492 SUPERFAMILY CCCH zinc finger 146 175 IPR036855 GO:0046872
Glsi02g0599 492 Gene3D - 376 467 - -
Glsi02g0599 492 ProSiteProfiles Zinc finger C3H1-type profile. 147 175 IPR000571 GO:0046872
Glsi02g0599 492 ProSiteProfiles Zinc finger C3H1-type profile. 422 450 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0599 Glsi-ChrGlsi02 3928652 3933535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0599 141 485 C2H2 Transcription Factor Family AT3G02830 39.726 1.47e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi02g0599 zf-CCCH 6.9e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0599 02 3928652 3933535 Glsi02g0599 02 3928652 3933535 ECH