Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0593 ATGCGAAGGATACAAACTGTGGGCGATATTACTCCCATTGATATATTTATAGGATCAATAAACTCCGTCACTCCATGCGAATGCAGATGCCAAGTTGGAGAGAAAGCGTGTAAGTATCTGCCTCCTAAGTTTGGTCCTGCAGTTTCTGCATTGGTTCATAAAAAAGCCATTATTGAGGATTCAAGTGGGCAGCAGTGGAAGGTAACAGTATCAATTGTCAATGGGTCTTTTGCTTTTCAGGAAGGATGGAATGCTTTTTCATTGGAGCATGGGCTTGAAGTTGGAGATTTTTTGGTATTCAATTACATTGGGGAATCACACTTTATTGTTAAGATCTATGATAAATCTGCATGTGAAAAGTTTGATTTTTCCAAAAAGAGAAAGCAGAAGAAAAGAAGAAGGAATCAAACTGGCTTTGATGCTAGTGATTACATGCTAATTAAACAAGGTTCGAATGCCTCAGTTGTCTCTGTGTTGGATGTGGAAAAAATGCAAAGCCAGTATATGGGTGATGATGTAGATGGAACACAAAATAAAGAAGAGAATACTTCAAAATATAATAATAGCAACGGAAGGGCCCAGTCTTCGTACAAAGCTAAAAACTGTGAAGACCCTTATTACATGACAGGCCGAGACTTCGGAGACAAAGGAAGAGAGGATTGGAACCCCATGTTTGATGTGTTTAGTTATGAAATATTGAACAATTCTGGTGTCGATGGCACTGGCAAATTTACAACCAATGCAAAAATTTCTCATCTTATTGTATCTCGAAATGATGCAAGCATTTGTAACAAAGATCCTTTGCTTGAAGAGATATTGAGTAGAGGAGCGACTCATGATTCATCTGAATTTGAATTGACTGGAAGAAGTCATTTTCTTGAAGAGATAGACAATATGCCATACTTCCGAGATAGACATTCTTACGGAGACAAGACTCCCGAGCATCTTTTAATCACATCTACTGTTCAACATGAAGAAAACACAGAGAACAATTCCTTTATGTCCAACAGGGAAGTTCAGAAGTGCCAGTTTGCTGACTACTCAGAAACTGATCAGGCAGTCATATTGAAAGAGAGACATGCCTTGCACATTGGCAGTTGTCAAAACCCTGAACAGATGATTAATGGGATCCATGAGTCCTTTAATGCTTATATTCACCACAGGGATATGGAAAGAATGGTTAAAGAAGAGCTTTTGGACATGACTCCAGATGTGTGCATTGACAAAGATAAATTGCTTTCAACAGGGGACATGGAAAGAATGGTTAAAGAAGAACTTCTGGACATGACTCCAGATGTGTGCATTGACAATGATAAATTACTGTCAACATGTGAACTTTTCTCCCTCACTTCTGTTTTGGCCTTTTCAAAGGTCATTCAGGGAGAGAAAGCTCAGAGTATTGAAATAATCATTAAAGATCATGACAGAATTCTAAATTCAGTGAAAGCTGAACCTAATGTCGATGGAGCTGCCCACATGCTTGCCTTCATCTCACAGACGAGGACTAAAAATAGAGAGAATGGTGGTGCTCCTTCTGGATCCACTGAGAAGATTGTGGCCGGTCCTTTACCATGA 1575 0.3917 MRRIQTVGDITPIDIFIGSINSVTPCECRCQVGEKACKYLPPKFGPAVSALVHKKAIIEDSSGQQWKVTVSIVNGSFAFQEGWNAFSLEHGLEVGDFLVFNYIGESHFIVKIYDKSACEKFDFSKKRKQKKRRRNQTGFDASDYMLIKQGSNASVVSVLDVEKMQSQYMGDDVDGTQNKEENTSKYNNSNGRAQSSYKAKNCEDPYYMTGRDFGDKGREDWNPMFDVFSYEILNNSGVDGTGKFTTNAKISHLIVSRNDASICNKDPLLEEILSRGATHDSSEFELTGRSHFLEEIDNMPYFRDRHSYGDKTPEHLLITSTVQHEENTENNSFMSNREVQKCQFADYSETDQAVILKERHALHIGSCQNPEQMINGIHESFNAYIHHRDMERMVKEELLDMTPDVCIDKDKLLSTGDMERMVKEELLDMTPDVCIDNDKLLSTCELFSLTSVLAFSKVIQGEKAQSIEIIIKDHDRILNSVKAEPNVDGAAHMLAFISQTRTKNRENGGAPSGSTEKIVAGPLP 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0593 524 MobiDBLite consensus disorder prediction 170 195 - -
Glsi02g0593 524 CDD B3_DNA 36 114 IPR003340 GO:0003677
Glsi02g0593 524 MobiDBLite consensus disorder prediction 501 524 - -
Glsi02g0593 524 Gene3D - 27 118 IPR015300 -
Glsi02g0593 524 SMART B3_2 18 116 IPR003340 GO:0003677
Glsi02g0593 524 MobiDBLite consensus disorder prediction 180 195 - -
Glsi02g0593 524 PANTHER B3 DOMAIN-CONTAINING 52 216 - -
Glsi02g0593 524 ProSiteProfiles B3 DNA-binding domain profile. 40 116 IPR003340 GO:0003677
Glsi02g0593 524 SUPERFAMILY DNA-binding pseudobarrel domain 39 118 IPR015300 -
Glsi02g0593 524 Pfam B3 DNA binding domain 32 115 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0593 40 120 B3 DNA Binding Superfamily AT5G66980 34.118 2.29e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi02g0593 B3 1.3e-14 CL0405