Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0568 ATGGGAAGGGACGGAGAGGCTTTGGTGGTGTGCAGTGACAGGAGAATGGGTTTCGGGTTAACGATTTTGGACATGGACACAGGAGAACATCTCCTTCACATACCAACCTGCGCTTCACCCCCTAGCGGGTTAGTGTGCTTAAGAAACCAGTTTATTGTTGCATCGCAAGTTAACAGACACGGCTCTGTTGGCGGGGGAGCCATTGGCATTTGGGCCTTGAACAAGCCTCAACAACCTCTTTGGAACTACCCATTGGAGGCCATTGGGCCACTTTCTTGCACAAAAGATGGCACATATCTTGCCGGAGGAGCTTTGTCAGGGAATGCTTATCTCTGGGATGTGACCAGTGGAAAGTTGCTTAAGACTTGGGGTGCTCATAATAAATCTTTGAACTGCATGCTGTTTTCAGATGATGATTCTTTCCTCATTTCTGGTTCAGATGATGGTATGATCTGTGTTTGGTCCATGATTAGTTTGTTAGATGTGGAAGGAATGGAAAGCTTGCCTTCTTCATTACATTGTTTGTTAGGGCACATGTCCACCATAACCGGTCTCTTAACTACAGCAGGCAATGACTTCTCAGTTTTAGTATCAAGCTCCCTTGATGGAACATGCAAGGTTTGGGATTTTATCTCGGGAAGGCTGATGCAAACTCAGTTTAATTCTTTGGCAATAACTTCCATTGCTCTACACCAAGGAGAAGGGCTCTTGTTTTGTGGATCAGTAAATGGACATATAATCCTCAAGAAGCTTGATGTTGGCCTGGAGGAAGATCCTTCTGTTATCTCAGTAGGCCAATCACTTGAGCTGAAAGGACACAATGGAGCCATAACTGCCCTGACCTCTAGTCAGGCCGGTCTAATATCTGCCTCTGAAGACTGCACAATCTGCATTTGGGATGTCATCAGCTGGACAGTTATTAGAAGGTTCAATCTTCAAAAAGGGCAAGTGACTAATCTGGCAGTAGTTCTGCATTCCTCAGTGCTCTCTACATCAAACTATAGGAGAGTCTCCAATCAGTATATTGTCTCTTCGCTTGACAAATATCCTCAGCTGATCAACTCATCCAAGGGAACTACTACTCCCCTTCCCTTATTTTTACCCTACAAAGAAAATCAAACATGCATTGATTTCCAAACTACTAAATCATTGAGACAGGACATGTCTGATTTGCAGAAAGTGCACAAGCCTATGGCTATTGACATGCAAATGAAATTGGAAACAATTATAGAGAATCGTATGTGGGCAACAAAGATGGCAAAGCATGTCATGGAGATGAACAAACATTTGCAACCACGACTGGCTACCCTTTTGGTTCAACTTGTTGTTCCTTTAAGACATGTTTCTGGGATAGTTCTGTCCCATGTATCTGTTCTTTTTCGTGAACATACTGAGAAAAAGACAGGAACTTTGACATTAGCTGCTGCAATAATGGCCCAGTTGAAGGCAGTTTCCCCATATTCATCCTCCAATATAGCTCCCTATGCACATAGAACAGGGCATCAACTGCTTCCCCAAATCTGGAAGGCGAAGCCATCATCATTGAGAGAGGTTAGGCCAAGAACAAGTGTTGATGTCACTAAACTTCCAGTCATAAAAGCAGTTTTACAGAGTGATAAAGAGGTAGAAATTTCCAAAACCAAGGGCAGTGGGCTTCGTGGAAAATTAAATAAGGTTGTGCTAGCTTATAGTGGTGGCTTGGACACATCAGTCATTGTCCCATGGTTAAGAGAGAATTATGGCTGTGATGTCGTTTGCTTCACTGCTGATGTTGGGCAAGGTATACAAGAGTTGGAAGGTTTAGAACAGAAGGCCAAAGCCAGTGGGGCCTCTCAGTTGGTGGTGAGGGACTTGAAGGAGGAATTTGTCAGAGATTACATATTCCCTTGCTTGCGTGCTGGTGCAATTTATGAGAGGAAGTATTTGCTTGGGACCTCAATGGCTCGCCCTGTTATTGCAAAGGCCATGGTCGATGTTGCCAAAGAAGTTGGAGCTGATGCTGTCTCTCATGGTTGTACAGGGAAAGGGAATGATCAGGTTCGGTTTGAGCTCACCTTCTTTGCTCTGAATCCCAAGCTAAATGTTGTGGCTCCATGGAGGGAGTGGGATATTACAGGGAGAGAAGATGCTATTGAATATGCAAAGAAGCATAATGTACCTGTTCCTGTGACAAAGAAATCCATATACAGCAGGGACAGAAACCTTTGGCACCTTAGCCATGAGGGTGATATTTTGGAAGACCCAGCAAAAGAGCCCAAAAAGGATATGTACATGATGTCCGTGGACCCAGAGGATGCTCCAAATGAAGCAGAATATGTGGAAATTGGCATAGAGTCAGGGTCTCCTGTTTCAGTCAACGGGAATAGCCTTTCGCCAGCTTCTTTACTTTCCAAGCTCAATGAGATTGGTGGAAGGCATGGAATTGGCCGGATTGACTTGGTTGAAAATCGGCTTGTGGGTATGAAGAGCCGTGGAATTTATGAAACTCCAGGTGGGACAATCCTCTTTGCAGCAGCACGTGAGTTAGAGTCTTTAACACTCGACCGAGAAACAATGCAAGTCAAAGACTCTTTAGCCCTCAAATATGCAGAGCTAGTGTATGCTGGCAGATGGTTTGATCCACTTCGCGAGTCCATGGATGCCTTCATGGAGAAGATCACGGAGACCACAACTGGTTCTGTTACTCTGAAATTGTACAAGGGATCTGTTACTGTAACAGGTAGGAAGAGCCCTTATAGCCTGTATAGGCAAGACATTTCATCGTTTGAGAGTGGACAGATATATGATCAAGCTGATGCCGCTGGGTTTATTCGGCTTTATGGTCTTCCAATGAGGGTGCGAGCAATGCTTGAGCAGGGCATCTGA 2865 0.4464 MGRDGEALVVCSDRRMGFGLTILDMDTGEHLLHIPTCASPPSGLVCLRNQFIVASQVNRHGSVGGGAIGIWALNKPQQPLWNYPLEAIGPLSCTKDGTYLAGGALSGNAYLWDVTSGKLLKTWGAHNKSLNCMLFSDDDSFLISGSDDGMICVWSMISLLDVEGMESLPSSLHCLLGHMSTITGLLTTAGNDFSVLVSSSLDGTCKVWDFISGRLMQTQFNSLAITSIALHQGEGLLFCGSVNGHIILKKLDVGLEEDPSVISVGQSLELKGHNGAITALTSSQAGLISASEDCTICIWDVISWTVIRRFNLQKGQVTNLAVVLHSSVLSTSNYRRVSNQYIVSSLDKYPQLINSSKGTTTPLPLFLPYKENQTCIDFQTTKSLRQDMSDLQKVHKPMAIDMQMKLETIIENRMWATKMAKHVMEMNKHLQPRLATLLVQLVVPLRHVSGIVLSHVSVLFREHTEKKTGTLTLAAAIMAQLKAVSPYSSSNIAPYAHRTGHQLLPQIWKAKPSSLREVRPRTSVDVTKLPVIKAVLQSDKEVEISKTKGSGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCDVVCFTADVGQGIQELEGLEQKAKASGASQLVVRDLKEEFVRDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQVRFELTFFALNPKLNVVAPWREWDITGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPAKEPKKDMYMMSVDPEDAPNEAEYVEIGIESGSPVSVNGNSLSPASLLSKLNEIGGRHGIGRIDLVENRLVGMKSRGIYETPGGTILFAAARELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESMDAFMEKITETTTGSVTLKLYKGSVTVTGRKSPYSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLEQGI 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0568 954 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Glsi02g0568 954 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Glsi02g0568 954 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Glsi02g0568 954 Hamap Argininosuccinate synthase [argG]. 556 952 IPR023434 GO:0004055
Glsi02g0568 954 ProSitePatterns Argininosuccinate synthase signature 2. 671 682 IPR018223 GO:0004055|GO:0005524|GO:0006526
Glsi02g0568 954 Gene3D HUPs 558 727 IPR014729 -
Glsi02g0568 954 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 309 IPR001680 GO:0005515
Glsi02g0568 954 Gene3D Argininosuccinate synthetase, chain A, domain 2 618 908 IPR024074 GO:0004055
Glsi02g0568 954 Gene3D Single helix bin 928 953 - -
Glsi02g0568 954 Gene3D - 3 220 IPR015943 GO:0005515
Glsi02g0568 954 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 218 IPR001680 GO:0005515
Glsi02g0568 954 SMART WD40_4 168 209 IPR001680 GO:0005515
Glsi02g0568 954 SMART WD40_4 76 113 IPR001680 GO:0005515
Glsi02g0568 954 SMART WD40_4 263 300 IPR001680 GO:0005515
Glsi02g0568 954 SMART WD40_4 116 155 IPR001680 GO:0005515
Glsi02g0568 954 SMART WD40_4 212 250 IPR001680 GO:0005515
Glsi02g0568 954 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 156 - -
Glsi02g0568 954 Pfam WD domain, G-beta repeat 117 155 IPR001680 GO:0005515
Glsi02g0568 954 Pfam WD domain, G-beta repeat 269 300 IPR001680 GO:0005515
Glsi02g0568 954 Pfam WD domain, G-beta repeat 171 209 IPR001680 GO:0005515
Glsi02g0568 954 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Glsi02g0568 954 ProSitePatterns Argininosuccinate synthase signature 1. 562 570 IPR018223 GO:0004055|GO:0005524|GO:0006526
Glsi02g0568 954 Gene3D - 221 345 IPR015943 GO:0005515
Glsi02g0568 954 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 726 952 IPR024074 GO:0004055
Glsi02g0568 954 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 156 IPR001680 GO:0005515
Glsi02g0568 954 CDD Argininosuccinate_Synthase 559 943 IPR023434 GO:0004055
Glsi02g0568 954 FunFam Argininosuccinate synthase 553 729 - -
Glsi02g0568 954 Pfam Arginosuccinate synthase 560 946 IPR001518 GO:0004055|GO:0005524|GO:0006526
Glsi02g0568 954 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 557 721 - -
Glsi02g0568 954 FunFam Argininosuccinate synthase 730 953 - -
Glsi02g0568 954 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 301 - -
Glsi02g0568 954 PANTHER ARGININOSUCCINATE SYNTHASE 555 952 IPR001518 GO:0004055|GO:0005524|GO:0006526
Glsi02g0568 954 NCBIfam argininosuccinate synthase 558 947 IPR001518 GO:0004055|GO:0005524|GO:0006526
Glsi02g0568 954 SUPERFAMILY WD40 repeat-like 4 330 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0568 Glsi-ChrGlsi02 3667390 3680327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0568 100 312 U-box Gene Family AT1G04510 26.484 5.02e-11 64.3