Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0565 ATGGCTAGCTGTAGTTCTCTTTCGTTGTGTCCGTACAGCCTTTATTACCGCCCAAACCCAAAAAGGCGTCCCATTTTGTGCTCGATTGGTTCTTCTACGCTCGTAGGTGCTAATGGATCTAAAATACCCCGCAAAAGATCTAGAAGAATAGAAGGTCCTGGAAGAAGCATGGAAGACTCTGTTCAACGCAAGATGGAACAATTTTATGAAGGATCTAACGGGCCACCCCTCCGAGTTCTTCCTATTGGTGGGCTGGGTGAAATTGGGATGAATTGCATGCTAGTTGGGAACCATGATCGCTACATCCTCATTGATGCTGGTGTCATGTTTCCAGACTACGATGAGCTTGGAGTCCAAAAGATTATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCCGTTGTTATAACACATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATACCAGCACTGGATTCTCATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATTAGAAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCAAGACTCAAAACATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAAATAGAGCCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGATTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACTGGGGACTGGAAGATTGATGAATCACCACTAGATGGCAAAGTTTTTGACCGTGAAGCTTTAGAGGCACTCTCTAAAGAAGGAGTAACATTAATGATGAGTGATTCAACAAACATACTTTCACCTGGAAGGACAATCAGCGAATCTGTTGTGGCAGATGCATTATTACGGCATATTTCGGCTGCTAAAGGGAGGGTTATTACAACCCAGTTTTCTTCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCGGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCTTTACGGACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCACCATTTGATCCGTCCACTCTGGTGAAAGTGGAGGATATTGATGCATATGCTCCTAAGGATCTGCTAATTGTCACAACTGGATCTCAGGCAGAACCACGTGCTGCCTTGAATCTTGCATCATACGGAAGTAGTCATTCTTTCAAACTGACCAAGGAAGATGTAATTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGCGTGATGAAAATGCTGAACCGTATATCAGATATTGGATCATCATTAGTTATAGGGAAGAATGAAGGGCTGCACACATCTGGTCATGGTTATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTAAAGCCACAACATTTTCTTCCCATACACGGAGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAGTCTACTGGCATTCGACACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTAAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTAAAGTATAGTGATGGGGACAAAGCATTTGGTACATCGAACGAACTCTTTATTGATGAAAGATTGAGAATTGCTTTAGATGGCATTATTGTGGTCAGCATGGAAATATTTCGCCCTCAAAATGTAGAGAGTTTTGTTGAAAATACCTTAAAAGGGAAGATCAGAATTACCACAAGATGTCTATGGCTTGACAAAGGGAAGCTGCTGGATGCTCTTCATAAAGCTGCTCATGCTGCACTTTCAAGCTGCCCTGCAAACTGTCCACTGGCTCACATGGAAAGAACTGTGTCTGAGGTATTGAGGAAGTTGGTGAGGAAGTATAGTGGCAAAAGGCCAGAAGTTATTGCCATTGCCTTAGAAAACCCTGCAGCTGTTCTTGCTGATGAGGTAAACACAAAGCTGTCTGGAAAATCTCATTTGGGTCTTCAGCAATCATCATTGAGAAAGGTGGAGGATGGACATACGGAGGAAAATCAGTCCACTAAAATGCCAATAACAAGAGATGATGTCATTTCTGTTGAAGGGCTCCTACCTGAGGAAGATGCCACTACATCAAGAGGAGATGGTGGATTTTCTGATTCAGAGGATTCAGATGAATTTTGGAAATCAGTCATTTTATCGTCCACTGTTGAGAAGTCAATCAAAGGCAACAATGGTTATATTCCACGAAAGAAACAGGAGTCCCAGTTGAAGAAAGAGGGCTCTCAAGACACCAATGAAGGCAATTCTGAAAATATGTCAAGTTCTGAACCCACAAAAACAGTAAAGAGAAATAAATGGAAACCTGAGGAAATTAAGAAGCTGATTGGTATACGTGGGGAGCTGAATGATAGGTTTCAACTTGTGAAGGGAAGAATGGTCCTCTGGGAAGAGATATCTGAAAAGTTGTTGGCTGATGGGATCGATAGAAGTCCAGGACAGTGTAAATCTCTGTGGACTTCTTTGATACAGAAATATGAGGAGATCAAGAATGGGAAGAAAAGCAAGAGAAGTTGGCCATATCTTGAAGATTTGCATGGAATACTATCTGATAACGAGGCACTAGCAGCAAAATGA 2601 0.4125 MASCSSLSLCPYSLYYRPNPKRRPILCSIGSSTLVGANGSKIPRKRSRRIEGPGRSMEDSVQRKMEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKEHGIFVPSRLKTFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDESPLDGKVFDREALEALSKEGVTLMMSDSTNILSPGRTISESVVADALLRHISAAKGRVITTQFSSNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPFDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDVILYSAKVIPGNESRVMKMLNRISDIGSSLVIGKNEGLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSNELFIDERLRIALDGIIVVSMEIFRPQNVESFVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPANCPLAHMERTVSEVLRKLVRKYSGKRPEVIAIALENPAAVLADEVNTKLSGKSHLGLQQSSLRKVEDGHTEENQSTKMPITRDDVISVEGLLPEEDATTSRGDGGFSDSEDSDEFWKSVILSSTVEKSIKGNNGYIPRKKQESQLKKEGSQDTNEGNSENMSSSEPTKTVKRNKWKPEEIKKLIGIRGELNDRFQLVKGRMVLWEEISEKLLADGIDRSPGQCKSLWTSLIQKYEEIKNGKKSKRSWPYLEDLHGILSDNEALAAK 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0565 866 Pfam Myb/SANT-like DNA-binding domain 772 854 IPR044822 -
Glsi02g0565 866 Gene3D - 278 428 IPR042173 -
Glsi02g0565 866 MobiDBLite consensus disorder prediction 731 773 - -
Glsi02g0565 866 PANTHER RIBONUCLEASE J 1 866 - -
Glsi02g0565 866 CDD GT1 773 838 - -
Glsi02g0565 866 MobiDBLite consensus disorder prediction 754 768 - -
Glsi02g0565 866 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 471 IPR011108 -
Glsi02g0565 866 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Glsi02g0565 866 ProSiteProfiles Myb-like domain profile. 767 831 IPR001005 -
Glsi02g0565 866 SMART Lactamase_B_5a 89 286 IPR001279 -
Glsi02g0565 866 Gene3D - 81 493 IPR036866 -
Glsi02g0565 866 Pfam Beta-lactamase superfamily domain 100 236 IPR001279 -
Glsi02g0565 866 Gene3D - 775 836 - -
Glsi02g0565 866 MobiDBLite consensus disorder prediction 692 711 - -
Glsi02g0565 866 MobiDBLite consensus disorder prediction 664 678 - -
Glsi02g0565 866 MobiDBLite consensus disorder prediction 652 685 - -
Glsi02g0565 866 CDD RNaseJ_MBL-fold 80 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0565 Glsi-ChrGlsi02 3650304 3659819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0565 774 858 Trihelix Transcription Factor Family AT2G38250 36.782 1.58e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi02g0565 Lactamase_B_2 5.7e-11 CL0381