Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0562 ATGGACATCCTAATAGAAGCTGTCTCCGGTGCGCACTTCTCCGGTTGGCGCCCTTCTTCTTCTTCCTCGTTATCTCCACGCGGTGACTTCAACGCCCCTATGCAGCCTTTTGTAATCGGAGTCTCTGGAGGTACGGCATCAGGCAAGACCACAGTGTGTGATTTAATCATTCAACAACTGCAAGATCATAGAGTCGTACTCGTCTGTCAGGATTCATTCTACCGTGGTTTAACAGATGAAGAATCAAAACGCGTCAGTGAGTATAATTTCGATCATCCTGACGCATTTGATACTGAGCAACTTGTAGAGTGTATCAGCAAGCTCAAAGCTGGACAGTCTGTTCAGGTTCCAATATATGATTTTAAGAACCATCGGCGGTCTTCTGAAAAATCCAGACAGGTCAATGCAGCTGAGGTAATCATTTTGGAGGGCATATTGGTTTTTCACGAACAACGTGTCCGCAACACGATGAATATGAAAATATTTGTTGATACAGATGCTGATGTAAGGCTTGCCCGCAGATTAAGACGTGATACTGTTGAAAGGGGTAGAGATATACACTCATATGCAAAATTTGTTAAGCCTGCCTTTGATGATTTTATTCTTCCATCCAAAAAGTATGCCGATATCATAATACCTCGTGGGGGAGAGAATCTTGTAGCAATTGACTTGATCGTTCAACATATCCGCATTAAGCTTGGCCAACATAACCTCTGCAAGATATATCCGAATTTGAATGTTATTCACTCTACGTTCCAGATTAGAGGCATGCACACTCTAATTCGTGACAGGGATTTATCAAAGCACGATTTTGTTTTTTATTCAGATCGGCTAATTCGTCTGGTAGTGGAACATGGTCTTGGCTACTTGCCATTTACAGAAAAGCAAGTTATCACATCTACAGGGTCAATTTACACTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTATCGATTATTCGAAGCGGTGAAAGCATGGAGAATGCATTGCGCGCATGCTGTAAAGGAATAAAAATAGGAAAAATTCTCATCCACCGTCAACGTGACGAGACCCAGCTTATTTATGAGAAGCTTCCGAAAGATATTTCAGAGAGACATGTTCTCCTTTTGGACCCAGTACTTGGTACAGGTAACTCTGCCAGCCAAGCCATTGAGCTTCTCATGAAGAAGGGAGTTCCAGAGTCCCGGATAATATTCCTTAACCTCATCTCTGCTCCTGAGGGAATACATCGTGTATGCAAACGTTTTCCATACCTGAAAATCGTCACTTCGGAGATTGAAGTTAAACTAAATGACGATTTCCGGGTCATACCAGGGTTGGGAGAATTTGGTGACCGCTACTTTGGTACGGACGAATCTTAG 1362 0.4266 MDILIEAVSGAHFSGWRPSSSSSLSPRGDFNAPMQPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVCQDSFYRGLTDEESKRVSEYNFDHPDAFDTEQLVECISKLKAGQSVQVPIYDFKNHRRSSEKSRQVNAAEVIILEGILVFHEQRVRNTMNMKIFVDTDADVRLARRLRRDTVERGRDIHSYAKFVKPAFDDFILPSKKYADIIIPRGGENLVAIDLIVQHIRIKLGQHNLCKIYPNLNVIHSTFQIRGMHTLIRDRDLSKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVITSTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRQRDETQLIYEKLPKDISERHVLLLDPVLGTGNSASQAIELLMKKGVPESRIIFLNLISAPEGIHRVCKRFPYLKIVTSEIEVKLNDDFRVIPGLGEFGDRYFGTDES 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0562 453 Pfam Phosphoribulokinase / Uridine kinase family 38 220 IPR006083 GO:0005524|GO:0016301
Glsi02g0562 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 225 IPR027417 -
Glsi02g0562 453 PRINTS Uridine kinase signature 36 53 - -
Glsi02g0562 453 PRINTS Uridine kinase signature 111 126 - -
Glsi02g0562 453 PRINTS Uridine kinase signature 182 193 - -
Glsi02g0562 453 PRINTS Uridine kinase signature 168 178 - -
Glsi02g0562 453 PRINTS Uridine kinase signature 66 77 - -
Glsi02g0562 453 SUPERFAMILY PRTase-like 235 451 IPR029057 -
Glsi02g0562 453 Gene3D - 236 450 IPR029057 -
Glsi02g0562 453 PANTHER URIDINE KINASE 31 361 - -
Glsi02g0562 453 CDD UMPK 38 232 IPR000764 -
Glsi02g0562 453 Pfam Uracil phosphoribosyltransferase 250 450 - -
Glsi02g0562 453 CDD PRTases_typeI 309 423 IPR000836 -
Glsi02g0562 453 FunFam Uridine kinase 33 235 - -
Glsi02g0562 453 FunFam Uridine kinase 236 450 - -
Glsi02g0562 453 NCBIfam uridine kinase 37 231 IPR000764 -
Glsi02g0562 453 Gene3D - 34 235 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0562 Glsi-ChrGlsi02 3636712 3642322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0562 1 452 PRT Gene Family AT3G27190 75.840 0.0 729
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0562 02 3636712 3642322 Glsi02g0562 02 3636712 3642322 ECH