Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0560 ATGGTTTCAACAAGACGAAGTGGATCTCTCTCTGGCAATAATACCAAAAGATCTTCCTCTTCGGAAGACAAGCCTCCCTCACCAAAGCGTCAAAAGGTCGACAATGGTGGTACGTCGGAGAAATCGATGCCGGCAGCGGAGAATTCTAAAGAATTATGTACCTCGGAGCCGGCGGCTGATCCTGGAGAATGCGATGCTCAGATCGCTGGACCGGGTGCCGGTGATGGTCTGAGTTCTTGCAAGGGCGATGCTGTCGCTGTGGCGGCGCCGATCGCTGATGGGTCTTCGCCGACTTTGATGGTTGATAAGCCGAGGGGTTCTTTGTCTTCGTGGAGTATATATCAGAAGCAAAACCCAAGTTTAGAGACTTCGACGCCGTGGTGCAGGCTCCTGTCGCAGTCTGCGCAGAACCCAAATGTTGTCATTTGCACACCGAACTTCACTATTGGTTCTAGTAGAAATTGCAACTTTCCATTGAAGGATCAGACTATAAGTGGAAATTTATGCAAGATCAAGCATACCCAGCGTGAGGGATGTTCTGTAGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTCTGCTAGTTAATGGGATAATTGTCAAGAAGAACACCAGCTGTGTGCTTAACTCGGGTGATGAAGTGATTTTTCAGCAACTAAATATTGAGGGTGCAGTTAAGGGTGCAGAAGTTCAGAGTGGTGTAGGGAAACTTCTGCAGCTTGAAAGGAGAACTGGAGACCCTTCAGCTGTGGCTGGGGCTTCTATTTTGGCTTCTCTTTCTAGCCTCAGACAGGATCTCTCAAGATGGAAATCTCCATCTCAGACCAGCAATAAATCTCAACGGGGTACTGACATCTCTACTCTTTCTGTTATTCATGATAATACAGAAATTGAGCTTGATGGCCTGGAAGGCAACTCAGCTCCAAATGTAGGGAGTGATAAAGCAGCTGATGTTGGAGCAAGCGGCAAGAATCCTCCAATGGAATGCAGTCCAGATGCTGGCACGGAGGCAGGCAATGTAAAACTCTCTGGGATGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCGATCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTTTAAACAGGTAATGGAAGAAAGAAATGGGACGAGGGATATTCTGGCAGCATCAACCTCGGGTATCTCTGTGCGCTGTGCGGTGTTTAAAGAAGATGTTCGTGCTGCAATATTGGAAGGAAGAGATATAGAAGCGTCATTGGAAAACTTCCCATACTATTTAAGCGAGAATACAAAAAATGTCTTGGTTGCAGCTTGCTTTATACACCTGAGGCATAAAGAACATGCAAAATATACCACAGATCTTACTACTATTAACCCGCGTATTTTACTTTCTGGACCTGCAGGTTCAGAAATTTATCAGGAGATGTTGGCAAAAGCCCTTGCCAATTACTTTGGAGCTAAGTTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCATCCAAAGAAGCGGAGCTACTCAAGGATGGATTTAATGCTGAAAAATCCTGCAGCTGCTCCAAGCAAAGTCCTACAGCCACAGACTTGGCGAGGAGCATGGACCCATCAACTAGTGAAACAGATACACCTAGCTCTTCAAATGTACCTACCTCGTATGGCCTTGAATCTCAACCTAAGATGGAGACCGATAGTGTACCCTCTGCCATTGGGACAGCTAAAAATTGCTTGTTTAAATTAGGTGATAGGGTAAAATATAGTTGCTCATCTTCTGGTGGCTTGTATCAGACATCAAGGGGCCCATCTAATGGAAGCCGGGGGAAGGTTGTCTTATGTTTTGATGATAATCCTTTGTCAAAAATTGGTGTAAGATTTGATAAACCTATAACTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGAAGGTCAAGGATTTTTCTGCAATGTTTCTGATCTTCGATTGGAAAACAGTGGTGTAGAAGAACTGGACAAATTACTTATCAATACGTTGTTTGAGGTTGTATTCAGTGAGAGCAGAACTTCACCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATCCATATTCATTTAAAAGTAAACTTGAAAAGCTTCCAGACAATGTGGTTGTAATAGGTTCACACACTCACATTGACAGTCGAAAGGAGAAGGAATTTCTACGTCAGAATTTTGGGAATCAAGACACTGATTTGCTGGAGAATCCAGCTGCTGATTTGGTGGTTCAATGTGATTGTGGAATTATTGGCCGGATACGGATTTTGTTGGGCAGTATAAATGCTGATTTTTTGGGCAATTTACTTGGTCTGCTTGCTAATTTGTTGGGAGATCTTTTTCAGAATTTGGAGGTGCGGGCTGAAGATTTGGAGGGGTCAAAGTTTGCCCATTTTGTGGAGATTCTGGCTGAATTAAATGGTGCTGATTTTGTGGAGTTTCTGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTTGGCAGCAATCAGACTGCACTTCTTGATTTGGCTTTCCCGGATAGTTTTGGAAGATTGCACGAGAGGGGGAAGGAAGTCCCAAAGCCAAACAAAACGTTGACTAAGCTTTTCCCTAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCAAGCTTCCTGGAAGCAGCAGCTGGATCGAGATACTGAGACTCTTAAAATTAAAGGAAATTTGCATCACCTGCGTACAGTGCTGGGCCGTTGTGGGATGGAATGTGAAGGACTTGAGACTTTGTGCATTAAGGACCAGACGCTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTATAAGCCACCATCTCATGCACAATCCTGAAGCTGATCCTGATGCAAAGCTTGTATTGTCTTGTGAAAGCATCCGGTATGGAATTGGGATCTTGCAAGCTATCCAGAATGAGTCCAAGAGCTTGAAGAAGTCTCTGAAGGATGTCGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCGCCTAGTGACATAGGTGTTACTTTTGATGATATCGGAGCTCTTGAAAATGTCAAAGATACGCTAAAGGAGTTGGTGATGCTTCCTCTGCAGAGGCCTGAACTATTTTGCAAGGGGCAATTAACCAAGCCTTGCAAAGGTATCCTGTTGTTTGGTCCCCCTGGAACAGGTAAGACAATGCTTGCAAAGGCTGTTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCCATGTCAAGCATTACATCGAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCCAGTAAAATCGCTCCTAGTGTTATATTTGTTGATGAAGTTGACAGCATGTTGGGTAGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCCTGCGTACAAAGGATACTGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATCCGGAGGCTGCCACGAAGATTGATGGTAAATTTGCCAGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGACTTGGATGCAATTGCTAGTATGACTGATGGATATTCTGGAAGTGATCTTAAGAATCTGTGTGTAACTGCTGCACACCGGCCAATTAAAGAGATATTAGAGAAGGAAAAAAAGGAACGAGCTGCTGCTCTAGCAGAAGGTAGACCTGCTCCAGCATTAAATGGCAGTGCTGATATCCGATCTTTAAACATGAAAGACTTTAAAGATGCTCATGAACGGGTATGTGCGAGTGTTTCCTCAGAATCCGTAAATATGACTGAGCTCTTACAATGGAATGAACTGTATGGCGAAGGTGGTTCAAGAAGAAAGAAAGCACTCAGCTATTTCATGTGA 3957 0.4359 MVSTRRSGSLSGNNTKRSSSSEDKPPSPKRQKVDNGGTSEKSMPAAENSKELCTSEPAADPGECDAQIAGPGAGDGLSSCKGDAVAVAAPIADGSSPTLMVDKPRGSLSSWSIYQKQNPSLETSTPWCRLLSQSAQNPNVVICTPNFTIGSSRNCNFPLKDQTISGNLCKIKHTQREGCSVAVLESTGSKGSLLVNGIIVKKNTSCVLNSGDEVIFQQLNIEGAVKGAEVQSGVGKLLQLERRTGDPSAVAGASILASLSSLRQDLSRWKSPSQTSNKSQRGTDISTLSVIHDNTEIELDGLEGNSAPNVGSDKAADVGASGKNPPMECSPDAGTEAGNVKLSGMNDFLRPFFRILARSSCKLKLSKSIFKQVMEERNGTRDILAASTSGISVRCAVFKEDVRAAILEGRDIEASLENFPYYLSENTKNVLVAACFIHLRHKEHAKYTTDLTTINPRILLSGPAGSEIYQEMLAKALANYFGAKLLIFDSHLLLGGLSSKEAELLKDGFNAEKSCSCSKQSPTATDLARSMDPSTSETDTPSSSNVPTSYGLESQPKMETDSVPSAIGTAKNCLFKLGDRVKYSCSSSGGLYQTSRGPSNGSRGKVVLCFDDNPLSKIGVRFDKPITDGVDLGGACEEGQGFFCNVSDLRLENSGVEELDKLLINTLFEVVFSESRTSPFILFMKDAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTHIDSRKEKEFLRQNFGNQDTDLLENPAADLVVQCDCGIIGRIRILLGSINADFLGNLLGLLANLLGDLFQNLEVRAEDLEGSKFAHFVEILAELNGADFVEFLSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHERGKEVPKPNKTLTKLFPNKVTIHMPQDEALQASWKQQLDRDTETLKIKGNLHHLRTVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWAISHHLMHNPEADPDAKLVLSCESIRYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPDVDLDAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEGRPAPALNGSADIRSLNMKDFKDAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0560 1318 SUPERFAMILY SMAD/FHA domain 126 218 IPR008984 GO:0005515
Glsi02g0560 1318 Gene3D - 1012 1293 IPR027417 -
Glsi02g0560 1318 MobiDBLite consensus disorder prediction 301 331 - -
Glsi02g0560 1318 Pfam ATPase family associated with various cellular activities (AAA) 1054 1183 IPR003959 GO:0005524|GO:0016887
Glsi02g0560 1318 Coils Coil 974 994 - -
Glsi02g0560 1318 Pfam FHA domain 148 216 IPR000253 GO:0005515
Glsi02g0560 1318 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 1012 1188 - -
Glsi02g0560 1318 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 398 1317 - -
Glsi02g0560 1318 MobiDBLite consensus disorder prediction 22 36 - -
Glsi02g0560 1318 SMART AAA_5 1050 1187 IPR003593 GO:0016887
Glsi02g0560 1318 MobiDBLite consensus disorder prediction 1 21 - -
Glsi02g0560 1318 Gene3D - 1186 1280 - -
Glsi02g0560 1318 Pfam AAA+ lid domain 1207 1242 IPR041569 -
Glsi02g0560 1318 MobiDBLite consensus disorder prediction 1 70 - -
Glsi02g0560 1318 CDD RecA-like_ATAD1 1017 1183 - -
Glsi02g0560 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1294 IPR027417 -
Glsi02g0560 1318 Gene3D - 126 226 - -
Glsi02g0560 1318 MobiDBLite consensus disorder prediction 517 563 - -
Glsi02g0560 1318 ProSitePatterns AAA-protein family signature. 1157 1176 IPR003960 GO:0005524|GO:0016887
Glsi02g0560 1318 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0560 Glsi-ChrGlsi02 3604955 3623391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0560 1013 1265 Calmodulin-binding Proteins AT3G56690 40.000 1.27e-41 164