Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0549 ATGCAAACTCTTCCATTCTCGGCCCCTCCTTCCTACCGAAGACCTCTTCTTCTCCACTTACAACCACATTCGCACTCACTTCACCTCTTCTCTTCTCTTCTCGCTCCCAAATTCACAACCATGGCGGCTCTCCACAACACCGCAACCTCACTTCAATCCAATTCCAAACACATTCGAATCCCCAGAGACTTTCTCTCCCCTAAACCTCTCCTCAATCTCTCCTTCTCCGGCACCACCTTCCCCTCTCTCAAACTCAAATTCGCCTCCGCCGCCACCACCACCCACCGCCGTTCCAACGGCGCTCTCGGAGCTAAGATGGTTTCGAGCGCCGCTGCCAGCTACGCTCTTGCCCTCGCCGATGTCGCCAAGGCCAACGACACACTCGACTCCACCACCTCCGACATCGAGAAAATCGACGAAATCTTCTCTGACCCCCAAGTGCTAAAATACTTTGTCAACCCAACTATAGAAATAGAGAAAAAGCGAAAGTTGGTGGAAGAAATTGCGACTTCCTCGAGCTTCCAGCCCCATACCCGCAACTTCCTCAACATTTTAATAGATGCCAAGAGGATCGATCTAATCAAGGAGATAGCGAAGGAATATGAGTTCGTATGTAACAGCTTAACGGAGACAGAGATGGCGACTGTGAGCTCGGTGGTGAAGTTGGAGTCGCAGCACTTGGCGCAGATAGCAAAGCAGGTGCAGAAGCTGACTGGGGCCAAAAATGTGAGGATCAAGACCCTGATTGATCCGAGCTTGGTGGCTGGCTTCACGATCAGGTATGGGAATTCAGGATCTAAGTTGATTGACATGAGCGTGAAGAAGCAACTGGAGGACATTGCTGCTCAGCTTGATCTGGGTGATATCAAACTCGCAGTATGA 882 0.5091 MQTLPFSAPPSYRRPLLLHLQPHSHSLHLFSSLLAPKFTTMAALHNTATSLQSNSKHIRIPRDFLSPKPLLNLSFSGTTFPSLKLKFASAATTTHRRSNGALGAKMVSSAAASYALALADVAKANDTLDSTTSDIEKIDEIFSDPQVLKYFVNPTIEIEKKRKLVEEIATSSSFQPHTRNFLNILIDAKRIDLIKEIAKEYEFVCNSLTETEMATVSSVVKLESQHLAQIAKQVQKLTGAKNVRIKTLIDPSLVAGFTIRYGNSGSKLIDMSVKKQLEDIAAQLDLGDIKLAV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0549 293 PRINTS ATP synthase delta subunit signature 259 277 IPR000711 GO:0015986|GO:0046933
Glsi02g0549 293 PRINTS ATP synthase delta subunit signature 110 129 IPR000711 GO:0015986|GO:0046933
Glsi02g0549 293 PRINTS ATP synthase delta subunit signature 179 190 IPR000711 GO:0015986|GO:0046933
Glsi02g0549 293 PRINTS ATP synthase delta subunit signature 190 204 IPR000711 GO:0015986|GO:0046933
Glsi02g0549 293 PRINTS ATP synthase delta subunit signature 241 256 IPR000711 GO:0015986|GO:0046933
Glsi02g0549 293 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 243 262 IPR020781 GO:0015986|GO:0016020|GO:0046933
Glsi02g0549 293 PANTHER ATP SYNTHASE DELTA CHAIN 94 285 IPR000711 GO:0015986|GO:0046933
Glsi02g0549 293 NCBIfam ATP synthase F1 subunit delta 111 284 IPR000711 GO:0015986|GO:0046933
Glsi02g0549 293 Pfam ATP synthase delta (OSCP) subunit 111 284 IPR000711 GO:0015986|GO:0046933
Glsi02g0549 293 Gene3D - 110 202 IPR026015 -
Glsi02g0549 293 Hamap ATP synthase subunit delta [atpD]. 106 286 IPR000711 GO:0015986|GO:0046933
Glsi02g0549 293 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 107 207 IPR026015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0549 Glsi-ChrGlsi02 3547835 3548716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0549 96 292 Primary Pumps ATPases AT4G09650 67.839 3.95e-97 284