Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0540 ATGGAGAACAACCAGCAAGCCCAATCCTCCTCATACCCACCTCAAGCCCCTGTTCCTCCTGGGCCTCCTGCTCCTTTCCACCATCTCCTTCAACAGCAACAGCAGCAGCTTCAGATGTTCTGGACTTACCAGCGGCAGGAGATTGAGCATGTCAATGATTTCAAGAACCACCAGCTCCCTCTCGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGATGTCCGCATGATCTCTGCCGAGGCACCCATTTTGTTTGCCAAGGCCTGTGAGCTCTTCATCCTCGAGCTTACTATACGATCTTGGCTCCACGCGGAGGAAAACAAGAGGAGGACTCTCCAGAAGAACGATATTGCCGCTGCCATCACTCGCACTGACATCTTCGATTTTTTGGTCGATATTGTGCCCAGGGACGAGATCAAGGATGAGGCTGCCCTCGGTGGCATGGTGGGGACCACTGCAAGCGGTGTCCCTTACTACTATCCACCCATGGGCCAACCTGCCGGCACTCCTGGTGGAATGATGATTGGACGGCCGGCGGTGGATCCCACCGGAATGTACGTGCAGCCACCTTCCCAGGCATGGCAATCGGTGTGGCAGACGACCACGGATGATGGGTCCTACGGCAGCGGCGGGAGCAGCGTACAGGGCAATCTTGATGGTCAGAGTTGA 669 0.562 MENNQQAQSSSYPPQAPVPPGPPAPFHHLLQQQQQQLQMFWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAALGGMVGTTASGVPYYYPPMGQPAGTPGGMMIGRPAVDPTGMYVQPPSQAWQSVWQTTTDDGSYGSGGSSVQGNLDGQS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0540 222 Pfam Core histone H2A/H2B/H3/H4 45 121 IPR007125 GO:0003677
Glsi02g0540 222 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 31 150 - -
Glsi02g0540 222 MobiDBLite consensus disorder prediction 1 27 - -
Glsi02g0540 222 SUPERFAMILY Histone-fold 21 130 IPR009072 GO:0046982
Glsi02g0540 222 Gene3D Histone, subunit A 26 136 IPR009072 GO:0046982
Glsi02g0540 222 MobiDBLite consensus disorder prediction 191 222 - -
Glsi02g0540 222 FunFam Nuclear transcription factor Y subunit gamma 27 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0540 Glsi-ChrGlsi02 3505683 3509447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0540 21 221 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.372 5.28e-113 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Glsi02g0540 CBFD_NFYB_HMF 2.2e-17 CL0012