Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0539 ATGGAATGTAATAAAGGTGATGCCCTCAGGGCTAAAGAGCTTGCAGAGAAGAAGTTTTTAGAGATGGACCTTGCTGGCGCGAAAAGATTTGCCTTGAAGGCACAAGACTTGTATCCAGGTCTTGATGGTCTTCCTCAGTTGCTGGCAACTTTTGAGGTGTATGTTTCTGCCGAGAAAAGAGTGAATGGAGAAGTTGATTGGTACAAGGTCCTTGGTGTGGAACCGTTGGCTGATGATGAAGCAATTCGAAGACGTTATAGGAAACTGGCTCTTACTCTACGCCCTGATAAAAATAAATCAGTAGGTGCGGATGGGGCTTTTAAACTTATCACTCAGGCATGGAATTTATTTTCTGATAAATCCAAGAGAATCTTTTATGACCAAAAGTGCAATTATAGGGGTATACATGAAGAAGTTTCAAATGGGAGGCCTTCTGTATCAGCAAGTCAAAATGGTTTTTTTAATTTCTTCAATACTGCTAGTTGGAAGGATAGAGACCATAGAACTGCTGCTCAATCTGGAACCACTCCAACATCTCCCGTGTCATTGAAACAGACATTTTGGACCATATGCAGTGCTTGCAGGACACAGTTTGAGTATCCTACAGTTTATCTCAACTGCAATCTTATATGCAACTGCTGCCATAAGCCCTTTTCGGCTTTAGAGACACCACCACCACCTATATATCGCAATGCTTCACGCACTCAGACTCACAGAAAGAAATTTAAATGTACCAGAATGGAAGGAGACTATTATGTTTCTGGAAGGACACCGACTTCTGCTACCAATTCATTAGAAAAAATATTTGGGTCCAGTCCTTTATCTATGCCATCCAGTGTCCCAACATCAGCTTCTTCTGCTACTGAAGCTCCTGGTGTTTTGGGACTGTCATCTGAGCATTTGAAGAGAGGACATGAGGATACACAACCTCCTGCTGTTAAGACAACTGCTTCAGCTTTTCAATCCTCCTGTTTCAGTTCCAATTCTGTTCTGAAAGGAGAAAGGCCAAAGAAAAAAAGAAGCATTGGTGAACGTAGAGCTGATAGTGACAGAAGAGAGGTGGAAACTAAAATGGCTTCTCAGAAAGAAGGAATAAGATTGGGTGGTGAATATGGATCTCAGAAGGGTAGTATTGAGATAGGAAAGGTTAATGTTGCTGGAAACTATAAACGTAATGGTATGAGGGATGTACCACAGCTGCAGTTAAAGAACATGTTGACGGAAAAGGCTAGGAAGGTGATTTGTGGGAAGCTTAATGAATGGAGTGTTGCTTCTGTGTCAAGGAATTTAAACAAGTCAAAAAAACCTGATAAGGAAGTCAGAGAGGACAATGAAAGGGTTAGAAATGGTGTAAAACATGGTGCAGAAGAATTTAAAAAATTTGTTGATACTGAGACCACGGGCAAAAAGTATCGTTCTGCTGCTTCTGATATTGCTGCTTTGAAGGTGGCTGATTCTCTGTCTATGAGTGTTCCAGACCCAGACTTTCATGACTTTGACAATGACCGAACAGAGAAATCATTTGGGGAGAACCAGGTATGGGCTGCTTATGATGATGATGATGGAATGCCCCGCTACTATGCTATGATTCATAGTGTAATATCCCTAAAACCATTCAAAATGAGGATTAGTTGGCTTAACTCTAAAAGCAATGATGAACTGGCCCCAATAAAGTGGGTTAGTTCTGGCTTCCCCAAGACATCTGGTGATTTTCGAGTAGGCAAGTATGAATTTAATGGCTCTCTTAATTCCTTCTCGCACAGGATTAAGTGGACGAAAGGTCTAAGAGGGGTTGTACACATATATCCTAAAAAGGGAGATGTTTGGGCTCTATATAGGAACTGGTCCCTTGATTGGAATGAACTCACCCCAGATGAAATTATACATAAATATGACATGATGGAAGTGCTTGAAGACTACAATGAGGAGCGAGGTGTGAATGTTGCTCCACTTGTTAAAGTTGCTGGTTTCAAGACAGTATTCTGCCAGCATGCAGATCCAGGGAAAGTCAAGAATATTCCAAGAGAAGAGATGTTTCGTTTCTCACACCAGGTTGTAACTGAAGATCCAAAGCAAGAGACTGGAACAACAGTTGAAAAATCTTCAGAAGATGGATTGGGGCACAGGGAGAATCCAAGGGATGGCGAGTTGGTTGAGAGCCACCAACCAACTAAGGAAGAAGATTCTGTTGAAGATATTAGAAGGAAGGTGGTGGCTGAAACAATGAGAAAGAAGGATAGTAGGCTGGAGAATTTGATTGTATATACGCGGAGACGGGTAAGGGATAAGAGAGCACTAGAAGTGATCCATTCTCACTCTCTTTCTCTCAATCCAATTCATACTTGTTGCTTGAATATTTCAAATGCTAGTGTTCTTGCAAGCAATCTACCGCTAGATAATATTGAGGGAAGTGCATTGAAATGGGATTAA 2430 0.4136 MECNKGDALRAKELAEKKFLEMDLAGAKRFALKAQDLYPGLDGLPQLLATFEVYVSAEKRVNGEVDWYKVLGVEPLADDEAIRRRYRKLALTLRPDKNKSVGADGAFKLITQAWNLFSDKSKRIFYDQKCNYRGIHEEVSNGRPSVSASQNGFFNFFNTASWKDRDHRTAAQSGTTPTSPVSLKQTFWTICSACRTQFEYPTVYLNCNLICNCCHKPFSALETPPPPIYRNASRTQTHRKKFKCTRMEGDYYVSGRTPTSATNSLEKIFGSSPLSMPSSVPTSASSATEAPGVLGLSSEHLKRGHEDTQPPAVKTTASAFQSSCFSSNSVLKGERPKKKRSIGERRADSDRREVETKMASQKEGIRLGGEYGSQKGSIEIGKVNVAGNYKRNGMRDVPQLQLKNMLTEKARKVICGKLNEWSVASVSRNLNKSKKPDKEVREDNERVRNGVKHGAEEFKKFVDTETTGKKYRSAASDIAALKVADSLSMSVPDPDFHDFDNDRTEKSFGENQVWAAYDDDDGMPRYYAMIHSVISLKPFKMRISWLNSKSNDELAPIKWVSSGFPKTSGDFRVGKYEFNGSLNSFSHRIKWTKGLRGVVHIYPKKGDVWALYRNWSLDWNELTPDEIIHKYDMMEVLEDYNEERGVNVAPLVKVAGFKTVFCQHADPGKVKNIPREEMFRFSHQVVTEDPKQETGTTVEKSSEDGLGHRENPRDGELVESHQPTKEEDSVEDIRRKVVAETMRKKDSRLENLIVYTRRRVRDKRALEVIHSHSLSLNPIHTCCLNISNASVLASNLPLDNIEGSALKWD 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0539 809 Pfam Domain of unknown function (DUF3444) 487 686 IPR024593 -
Glsi02g0539 809 SUPERFAMILY Chaperone J-domain 60 130 IPR036869 -
Glsi02g0539 809 PANTHER BNAC03G44070D PROTEIN 1 695 - -
Glsi02g0539 809 SMART dnaj_3 65 122 IPR001623 -
Glsi02g0539 809 MobiDBLite consensus disorder prediction 685 730 - -
Glsi02g0539 809 PRINTS DnaJ domain signature 102 122 IPR001623 -
Glsi02g0539 809 PRINTS DnaJ domain signature 86 101 IPR001623 -
Glsi02g0539 809 PRINTS DnaJ domain signature 68 86 IPR001623 -
Glsi02g0539 809 MobiDBLite consensus disorder prediction 332 360 - -
Glsi02g0539 809 Gene3D DnaJ domain 64 172 IPR036869 -
Glsi02g0539 809 MobiDBLite consensus disorder prediction 272 291 - -
Glsi02g0539 809 Pfam DnaJ domain 66 127 IPR001623 -
Glsi02g0539 809 CDD DnaJ 66 119 IPR001623 -
Glsi02g0539 809 MobiDBLite consensus disorder prediction 328 360 - -
Glsi02g0539 809 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0539 Glsi-ChrGlsi02 3501272 3504435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0539 4 228 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.760 1.53e-26 110