Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0531 ATGGACTGGAATATGAAAGCAGCTTCTTGGGATGTGACTGAATTAGATCAAGCAACCTTAGCCAACATAGAAACAGCTGATGGGTCAAGAAGATTTGGAGTTCAAAGAACTACAGGGGAATTTTCTGTCGATTTGAAGCTGGGTCAAGTGGGGAATTCTGGCACAGAACCAGTGGCCAAGTGGAAATATGTTGCTGGAGTCTCCAAAGTGGCATCTTCACCCTCAGGATCATCTAAGAGAGCTAGAGCAATTAATAACGGAACTCAGACGGTGTCTTGCCTAGTGGACGGGTGCAATTCAGATCTTAGTAATTGTAGGGACTATCATAGGCGCCATAAGGTATGCGAACTCCATTCCAAGACTCCGGAGGTCACAATTGGCGGACACAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCGCTGGAGGAATTTGATGAAGGAAAAAGGAGCTGCCGGAAACGTTTAGATGGACACAACCGACGGAGAAGAAAGCCGCAGCCAGAAGTTATCGCGCGATCTGGTAGTTTTTTGTCCAATTACCAAGGAACCCAGTTTTTGCCCTTCTCAAGTTCTCACGTATATCCCTCCACTGCTGTGGTGAACCCTAGTTGGAATGGAGGTGCGACATCCTGTGGGGATGCTAGGCTGCACAACCAACACCAACAATTGCATTTGGTGGATAAACAAGACCTATTTCTGGGATCTACTTCCAGCAGCTGTTATAAAGAAGTGAAGCAGCTGGCATTCTTGCAAGGTGACAATTCCACAATAGACAACCAAAATCAAACGTTTCTGAGGAGCAGCCCTTTGTCAGAAAGCGAGGGGTTTAGAAGCAAGATATTCTGTGATGGCTTAACATCTCCACTCCACGACCGCGACTCTCGATGTGCTCTCTCTCTTCTGTCATCGCCACAGACGCACACACCTGGGAATGGTTTGAGCCAAATGGTGCAGCCTCACTCAATGTCCCTTATGCAGCAGCAGCAACCCTTAGCCCTGAGCCTGCCTCATAACAGCTTAGACTCCGTGGACGTGGAACCAGTTTTGGTTCCCCATGGGAGTGACCATTGTCCGGCAATGTATAACATCAATGAAGCCCCTCAACCTTTCCCTTTTCTTTGGGAATAG 1134 0.478 MDWNMKAASWDVTELDQATLANIETADGSRRFGVQRTTGEFSVDLKLGQVGNSGTEPVAKWKYVAGVSKVASSPSGSSKRARAINNGTQTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEVIARSGSFLSNYQGTQFLPFSSSHVYPSTAVVNPSWNGGATSCGDARLHNQHQQLHLVDKQDLFLGSTSSSCYKEVKQLAFLQGDNSTIDNQNQTFLRSSPLSESEGFRSKIFCDGLTSPLHDRDSRCALSLLSSPQTHTPGNGLSQMVQPHSMSLMQQQQPLALSLPHNSLDSVDVEPVLVPHGSDHCPAMYNINEAPQPFPFLWE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0531 377 SUPERFAMILY SBT domain 91 172 IPR036893 GO:0003677|GO:0005634
Glsi02g0531 377 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 329 IPR044817 GO:0003677
Glsi02g0531 377 Pfam SBP domain 93 166 IPR004333 GO:0003677
Glsi02g0531 377 Gene3D - 84 154 IPR036893 GO:0003677|GO:0005634
Glsi02g0531 377 ProSiteProfiles Zinc finger SBP-type profile. 90 167 IPR004333 GO:0003677
Glsi02g0531 377 FunFam Squamosa promoter-binding-like protein 14 84 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0531 Glsi-ChrGlsi02 3444663 3447099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0531 1 377 SBP-box Gene Family AT5G50670 42.714 1.65e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi02g0531 SBP 1.2e-30 No_clan