Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0512 ATGGACAAGTTCAATTTTGTTAAAAATGGAACGAGCAGATTGCCTCCTGGCTTTCGTTTCCAACCAACAGACGAAGAGCTTGTCTTTCAGTTCCTTAAATGTAAGGTCTTCTCCAATCCCTCGCCTGCTTCTATTATTCCCGAGGCCAATGTCTGCAAGTACGATCCTTGGGATTTGCCAGGTAATTCCGACGAGGAGGAGAGGTACTTTTTTAGCATCAAAGAAGCAAAATATCGAAATGGTAATCGAATGAATCGAACAACCATCTCTGGCTATTGGAAGGCAACTGGGTCAGATAAAAAGATTTCATCTTCAAGAAATAATGATGTTGCTGGGATGAGAAAAAGCCTGGTTTTTTATCAAGGCAATGCCCCAAATGGCTCTAGAACTGATTGGGTCATGCACGAATATCGCCTTGTCACTACCCAGAAGGATCATGCAAGTGAAATAGGAGATTGGGTTGTGTGTCGGATATTCCAGAAGAAAAGAAGTACAGATCAAAAGAAGCAAGACATGGTGGAGAATAATGTTGAGACTGTTACTTTAAGAGGGCGAGAGGGTCAAGAAAGTGAAAAAGCAACAACCTTTGTTCTTCCTGGCGCTTCCCCTCCACTGAAGTTGAAGATGATAGACTTCGCTCGTGTGCAGAAGGAGCTCCTAGAATGCGGCAAAGACACTGAAGGCTCCGGCATCAGAGTCAACCTTAAAGGCGACAATCTTGCGCGTTTGATCGGAACCATTCCTGGCCCTATTGGCACTCCTTACGAGGGAGGCATTTTCCAAATTGATATTACGTTACCAGACGGATACCCTTTTGAACCACCCAAAATGCAGTTTGCGACGAAAGTCTGGCACCCTAATATCAGCAGTCAAAGTGGAGCTATTTGCCTAGACATCTTGAAGGATCAATGGAGCCCTGCACTGACACTGAAGACGGCGCTGCTTTCAGTGCAAGCGCTTCTCTCTGCTCCTCAACCTGATGATCCCCAAGATGCTGTTGTAGCACAACAGTATCTCAAAGACTATCAGACATTTGTTGGCACTGCTCGTTACTGGACTGAAACTTTTGCCAAGACATCATCTCTTGGGATTGAAGATAAGGTACAGAAGCTGGTCGAGATGGGGTTTCCTGAAGCTCAAGTGAGGAGTATTTTAGAAGCTGTTGGTGGAGATGAAAACTTGGCTCTTGAAAGGCTTTGCTCTAGCTAG 1209 0.45 MDKFNFVKNGTSRLPPGFRFQPTDEELVFQFLKCKVFSNPSPASIIPEANVCKYDPWDLPGNSDEEERYFFSIKEAKYRNGNRMNRTTISGYWKATGSDKKISSSRNNDVAGMRKSLVFYQGNAPNGSRTDWVMHEYRLVTTQKDHASEIGDWVVCRIFQKKRSTDQKKQDMVENNVETVTLRGREGQESEKATTFVLPGASPPLKLKMIDFARVQKELLECGKDTEGSGIRVNLKGDNLARLIGTIPGPIGTPYEGGIFQIDITLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVGTARYWTETFAKTSSLGIEDKVQKLVEMGFPEAQVRSILEAVGGDENLALERLCSS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0512 402 Pfam Ubiquitin-conjugating enzyme 214 352 IPR000608 -
Glsi02g0512 402 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 363 402 IPR015940 -
Glsi02g0512 402 CDD UBA_II_E2_UBC27_like 365 400 IPR041974 -
Glsi02g0512 402 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 284 300 IPR023313 -
Glsi02g0512 402 Gene3D NAC domain 23 166 IPR036093 GO:0003677|GO:0006355
Glsi02g0512 402 SUPERFAMILY UBA-like 364 401 IPR009060 GO:0005515
Glsi02g0512 402 SUPERFAMILY NAC domain 10 161 IPR036093 GO:0003677|GO:0006355
Glsi02g0512 402 Gene3D - 357 402 - -
Glsi02g0512 402 FunFam Ubiquitin-conjugating enzyme E2 27 364 400 - -
Glsi02g0512 402 SMART ubc_7 213 358 - -
Glsi02g0512 402 Pfam UBA/TS-N domain 365 399 IPR015940 -
Glsi02g0512 402 SUPERFAMILY UBC-like 212 359 IPR016135 -
Glsi02g0512 402 ProSiteProfiles NAC domain profile. 14 161 IPR003441 GO:0003677|GO:0006355
Glsi02g0512 402 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 210 358 IPR000608 -
Glsi02g0512 402 CDD UBCc 214 353 IPR000608 -
Glsi02g0512 402 SMART uba_6 364 401 IPR015940 -
Glsi02g0512 402 FunFam ubiquitin-conjugating enzyme E2 27 209 360 - -
Glsi02g0512 402 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Glsi02g0512 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 190 - -
Glsi02g0512 402 Gene3D Ubiquitin Conjugating Enzyme 209 356 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0512 Glsi-ChrGlsi02 3312658 3318786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0512 1 167 NAC Transcription Factor Family AT5G13180 62.874 1.68e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi02g0512 UQ_con 3e-41 CL0208