Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0508 ATGAAAGTACCGGAGGCCGATCCTATCAATCTCTCCATTCAGCTTCTGTCTTCTCTTCTTGATGAAATTCCCACCGTTTTAAACTTCAAAGGTAAATGGTCCTTGATCAGAGCGAAACTTACCGACCTTCAGACTCAACTCACCGATATCTCCGCCGAGTTCCTCAATTACTCCTCCAATAGTCTGTCGCTCGAGCTACTTCAGTCCATTTGCCACACCCTTCGCGATGCAATTTCGCTCGCCAAAGATTGCCAGTCCTCGAACTTATCCCAGGGAAAGCTTAAGACCCAGAGCGACATTGATTCGGTCCTCGCTAAGCTGGATCGCCATGTTAAAGATTGTGAGATTTTGTTCAGCAGTGGCGTTCTACAAGACGGCGCCATTTCTAGCTTGTCTAAGAGGGAGGCCGTACGGTCTGAATCCAGGAACCTGATTACTCGTTTGCAAATTGGTTCTGCTGACTCAAGGAAGTCTGCGATGGACTCGTTGTTGGATTTACTCCAACAGGATGACAAGAATGTGATGATAGCTGTGGCGCAGGGTGTGGTTCCTGTGCTCGTCCGTTTACTGGATTCGACCTCTTCTGAGATGAAGGAGAAGATTGTTGCTGCGATCTCTAGAGTTTCCACGGTGGATAGTAGCAAACATGTTTTAATCGCAGAGGGTTTGTTGCTTTTGAATCATTTGCTTCGAGTTCTGGATTCGGGGAGTGGGTTTGCCAAACAGAAAGCTTGTATTGCCCTTCAAGCTCTAAGTTTCTCCAAAGAGAACGCGAGGGCAATCGGGTCTAGAGGTGGAATCTCGTCACTATTGGAGATTTGCCAAGCCGGCACGCCTGGTTCCCAAGCTTCCGCTGCAGGGGTTTTGAGAAATCTTTCACTCTTCGCTGAAATTAGAGAAAATTTCATTGAGGAAAATACGATTGTTGTTCTATTGGGGCTTGCCTCTTCGGGAACTGCATTAGCGCAAGAAAATGCCATTGGGTGTTTGTCTAATTTAATTTCTGAAGACGAAAGTTTGAAACTTTTGTTTGTAAAGGAAGGAGGGATTGAGTGTTTGAAGAATTTCTGGGATTCAGCTCCAATTATTCGGAGTCTTGAAGTCGCGGTTGACTTGTTGAGGCACCTGGCTTCTAGTTCATCAGTTGCTGAAGTTCTTGTTTCTGATGGGTTTATACCCCGCCTTGTGGGTGTGTTAAATTGTGGAGTACTAGGTGTCAGGACTGCGGCGGCTCGAGCTGTATATGCTTTGGGGTTCAGCAGCCCGAAGTCGAGGAAAGAGATGGGTGAATGTGGATGCATTACCCCATTGGTCAAGATGCTGGATGGTAAGGCTGTAGAAGAGAAAGAAGCAGCTGCAAAGGCGTTGTCAATACTCTTGTTGTGTGCGGGCAATAGAAAGATTTTCCGAAAGGATGAGAGGGGTTTAGTGAGTGCGGTTCAGCTGTTGGATCCTTCACTACAGAATTTGGATAAGAAATACCCTGTTTCTGTGCTGACCTCGCTAGTTCATTCAAAGAAGAGTAGGAAACAAATGGTAGCGGCTGGTGCTTGTGTATATACTCAAAAACTTGTTGAGATCGATGTTGAGGGGGCTAAGAAACTCTTGGATAGCCTTGGTAGTGGTAAGATATGGGGAGTTTTTGCAAGACCCTAG 1656 0.4626 MKVPEADPINLSIQLLSSLLDEIPTVLNFKGKWSLIRAKLTDLQTQLTDISAEFLNYSSNSLSLELLQSICHTLRDAISLAKDCQSSNLSQGKLKTQSDIDSVLAKLDRHVKDCEILFSSGVLQDGAISSLSKREAVRSESRNLITRLQIGSADSRKSAMDSLLDLLQQDDKNVMIAVAQGVVPVLVRLLDSTSSEMKEKIVAAISRVSTVDSSKHVLIAEGLLLLNHLLRVLDSGSGFAKQKACIALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQASAAGVLRNLSLFAEIRENFIEENTIVVLLGLASSGTALAQENAIGCLSNLISEDESLKLLFVKEGGIECLKNFWDSAPIIRSLEVAVDLLRHLASSSSVAEVLVSDGFIPRLVGVLNCGVLGVRTAAARAVYALGFSSPKSRKEMGECGCITPLVKMLDGKAVEEKEAAAKALSILLLCAGNRKIFRKDERGLVSAVQLLDPSLQNLDKKYPVSVLTSLVHSKKSRKQMVAAGACVYTQKLVEIDVEGAKKLLDSLGSGKIWGVFARP 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0508 551 SMART arm_5 254 294 IPR000225 GO:0005515
Glsi02g0508 551 SMART arm_5 379 419 IPR000225 GO:0005515
Glsi02g0508 551 SMART arm_5 295 335 IPR000225 GO:0005515
Glsi02g0508 551 SMART arm_5 421 461 IPR000225 GO:0005515
Glsi02g0508 551 SMART arm_5 337 378 IPR000225 GO:0005515
Glsi02g0508 551 SMART arm_5 170 210 IPR000225 GO:0005515
Glsi02g0508 551 Gene3D - 361 527 IPR011989 -
Glsi02g0508 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 223 IPR000225 GO:0005515
Glsi02g0508 551 SUPERFAMILY ARM repeat 143 489 IPR016024 -
Glsi02g0508 551 Pfam Armadillo/beta-catenin-like repeat 170 207 IPR000225 GO:0005515
Glsi02g0508 551 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 549 - -
Glsi02g0508 551 Gene3D - 141 360 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0508 Glsi-ChrGlsi02 3292136 3293791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0508 127 410 U-box Gene Family AT2G23140 26.923 6.53e-17 82.0