Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0502 ATGGATACGAGTTGTGTAGAAATAGACTATCCTTCCAATGGAAAAGATGGTAAAGAGGCCAGCAATGATCAAGGATTCCATGTTCCACAGACTGAAATTTTCCAAGAACGTACATCATATCGAAAAAGAAAGAATAGCTTGCCACTACCTAGTCTTCAAAAACGTAAGATGACAAGAGTTACTAAGGAAGGTCATAAGGTTGAGAGTATCTCCTATTCCAATGAGACAGATTTGCATCATACCAGCATAGGTTGTAAAGGAGTTAGCCAAGGCAAGTCTAATTCTAAGTTCCTGAAACTCAACGTTGTTAACGGGTTGCAGCATCCGATGACTCCCAGGTTCGGCGAGGTAAATAGAGCACTTGAGAGAGCAAATGCTTTCAAATCTCAATATCCATCTTTTGTGTTTGTTGCTAGACAATCATACCTCTATTCTTCTCCTGACATGAATCTACCATCCAAATTTGCCAAGAGGTTCTTGGGTTCAAAAAAGAATGGAGAAAGTGCAAATCTGCATATGTTGGATGGGAGAGTTTGGCTTGCTAAGTACATCATCAGGAAATATAAGACAAGGACAAGATTTGAACTCTCTTGTGGTGGGTGGAAGGCATTTGCCAGGGACACTGACTTGAAAGTAGGTGATGTTTGTGTCTTTGAGCTGACAGGAAGAACTGAAATCACTTTCCAGGTTTTGATCTTTCGAAACACTGAAGAATCAGGACAAAGTAGAGTTGCAAGTCAAGGACAGAGAAAGAGAAGAGTGGAAGTTAAAACCGAGATTAATTGTTCTGGCAATGATGCATTTGGAATATCAGACCTACATGGACAACCTATCACCAAGAAATTTCAGCCTAAACTTGAACCCAGTAAGTATCTCCAAACAGAGTTGCCAGGACGCTTGCTTGATAGAGATAGCTGTGGCTCATGCTTTTGTTGGTATGAGATAGGTGAGCTGAAGCAGTGGAGTCAAGGGAGGAGAACCGATAACCAGAATATGAAAAGGACTTCTTTTAGAGATTTTGGAACCTATGGATGTGCTGCTGCTGCAAGTTTCAACTCACAGAATCCCTTCTTCAGAGTAACCATAGGATTATCCCATACCCCGAGAGTCCCAGATTTCTTTGTAAAGAAGTACTTCAAACATGGTGGACAGGTTGTACTGGAGGTTGGAGGAAGATTGTGGAGAGTCAAGTTGATCCTTCATCCACGCCCTTTCTTTTCTGCAGGCTGGGGTGCATTTGCAAGAGAGAATGCCCTAGATGTAGGAGACGCTTGCTTCTTCGAGTTGATGAACAGCGATGAAATTGTGATGAAAGTTTCCATTTTCAAGGACTCCTCAGCTAAGTGA 1347 0.4187 MDTSCVEIDYPSNGKDGKEASNDQGFHVPQTEIFQERTSYRKRKNSLPLPSLQKRKMTRVTKEGHKVESISYSNETDLHHTSIGCKGVSQGKSNSKFLKLNVVNGLQHPMTPRFGEVNRALERANAFKSQYPSFVFVARQSYLYSSPDMNLPSKFAKRFLGSKKNGESANLHMLDGRVWLAKYIIRKYKTRTRFELSCGGWKAFARDTDLKVGDVCVFELTGRTEITFQVLIFRNTEESGQSRVASQGQRKRRVEVKTEINCSGNDAFGISDLHGQPITKKFQPKLEPSKYLQTELPGRLLDRDSCGSCFCWYEIGELKQWSQGRRTDNQNMKRTSFRDFGTYGCAAAASFNSQNPFFRVTIGLSHTPRVPDFFVKKYFKHGGQVVLEVGGRLWRVKLILHPRPFFSAGWGAFARENALDVGDACFFELMNSDEIVMKVSIFKDSSAK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0502 448 CDD B3_DNA 356 443 IPR003340 GO:0003677
Glsi02g0502 448 MobiDBLite consensus disorder prediction 1 26 - -
Glsi02g0502 448 SUPERFAMILY DNA-binding pseudobarrel domain 351 443 IPR015300 -
Glsi02g0502 448 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Glsi02g0502 448 CDD B3_DNA 132 234 IPR003340 GO:0003677
Glsi02g0502 448 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 79 242 IPR044837 -
Glsi02g0502 448 SMART B3_2 357 445 IPR003340 GO:0003677
Glsi02g0502 448 SMART B3_2 134 236 IPR003340 GO:0003677
Glsi02g0502 448 Gene3D - 344 445 IPR015300 -
Glsi02g0502 448 Gene3D - 115 238 IPR015300 -
Glsi02g0502 448 ProSiteProfiles B3 DNA-binding domain profile. 385 445 IPR003340 GO:0003677
Glsi02g0502 448 SUPERFAMILY DNA-binding pseudobarrel domain 127 235 IPR015300 -
Glsi02g0502 448 Pfam B3 DNA binding domain 137 235 IPR003340 GO:0003677
Glsi02g0502 448 Pfam B3 DNA binding domain 369 443 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0502 Glsi-ChrGlsi02 3242198 3244137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0502 149 443 B3 DNA Binding Superfamily AT3G18990 23.457 3.30e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi02g0502 B3 6e-17 CL0405