Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0492 ATGATGTCTAGAGTTAACGGCGTTGCGTGGCTGGATGACAGAGAATATGATGACTCTACTCCCTCTTCATGGGCTCACGCTAATGCCAACATCAACACCAGCAACGAGAAAAACAATTCTGGTTTTGTTGAGAGCAAGGACGAGATAGGTTCTCTGTGTGCTTTTAAACCTATGCTTGAGGTCGATGAGGATTGGTATTTGGCGAATAATGGTATCCAAACTCACCCAGATATGAGGGATATCACCTTCTCGCCGAACTTTGCTGACCCAGATAGTCTATTACTCCACCCAGTGGACTCGTCCTCTTCGTGCTCCCCGTCTTCCTCTGTTTTCAATAATCTCGACCCATCACAGGTGCCGTACTTTCTGCCTCCCAAACCCACCTTGTCTTCTCTTCTCAATGTTGTCCCTAGTAATACTTTAGAGCATGGCTTTGATATGGGTTGCGAGGTCGGGTTTCTTGAGCCTCAAGCTTCCAGTTCTTCAGCGGCGCTCAATAGAGGGGCTGGCCTCTTGGGAGGCTTCACTGACTTGAGCTCAAATACCCAGCTAAGCCTTCCTAATTTGTGCTCAGATCCCCAGTTACCAACGACGCGTGTGCCCCAATTGCCCGAAAGCAGCACCAGCTTTGCGGGCTTTCGGAATTTCGAGGAGGGTTCTGGAAAGGCGCCGGCGTTGATTCTAAATAGGTCCAAGATACTGAGACCCCTTGAATCGTTGCCGCCATCGGGAGCACAACCCACTCTTTTTCAGAAGAGAGTAGCTCTTCGAAAAAGGTTAGCAAATAATAAGGGAAATATGGGAGTTTTGGGGTCCGAAGGTGGTCAGGTTCCAAACTGGATGGAGAGAGATAGAGGGAAGAGTGAAATGGGAGAAGGGAATGATAAGAAAAGGAAAATGGGTTACTGGGAAGACGTTGAAGAAGCCAGCTTTGATGGGTCAGGATTGAATTACGATTCGGATGACTTAACTGAGAATAATAGAACAGAAGAGAACGCGAAGAATGGTGGAAACAGCTCAAATGCGAACAGTACGGTCGCTGGTGGGGATAAGAAAGGGAAGAAGAAGGGAATGCCTGCAAAGAATTTGATGGCTGAACGCCGCCGTCGGAAGAAGCTCAATGATAGACTATATATGCTGAGGTCCGTCGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCAATCGAGTACCTGAAGGAACTTCTGCAAAGGATCAATGACCTTCATAGCGAATTGGAGTCAACACCTACTGGCTCTTCACTGACTCCTGCCTCTAGCTTTCATCCTTTGACACCTACTCCGCCCACATTACCCAGCCGTATAAAGGATGAACTTTGCCCCAGCTCATTGCCAAGTCCCAATGGCCAACCTGCAAGGGTTGAGGTTAGGTTGCGCGAAGGAAGAGCTGTAAATATCCACATGTTTTGTGGGCGCAAGCCTGGTCTCTTGCTTTCAACCATGAGGGCTTTGGACAACCTTGGGTTAGACATCCAGCAGGCTGTTATTAGCTGTTTTAATGGATTTGCTATGGATATCTTTCGAGCTGAGCAATGCAAGGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTTCCATAGCATGATCTAG 1647 0.4797 MMSRVNGVAWLDDREYDDSTPSSWAHANANINTSNEKNNSGFVESKDEIGSLCAFKPMLEVDEDWYLANNGIQTHPDMRDITFSPNFADPDSLLLHPVDSSSSCSPSSSVFNNLDPSQVPYFLPPKPTLSSLLNVVPSNTLEHGFDMGCEVGFLEPQASSSSAALNRGAGLLGGFTDLSSNTQLSLPNLCSDPQLPTTRVPQLPESSTSFAGFRNFEEGSGKAPALILNRSKILRPLESLPPSGAQPTLFQKRVALRKRLANNKGNMGVLGSEGGQVPNWMERDRGKSEMGEGNDKKRKMGYWEDVEEASFDGSGLNYDSDDLTENNRTEENAKNGGNSSNANSTVAGGDKKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHSELESTPTGSSLTPASSFHPLTPTPPTLPSRIKDELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCGRKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGFHSMI 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0492 548 FunFam BHLH transcription factor 353 421 - -
Glsi02g0492 548 Gene3D - 351 421 IPR036638 GO:0046983
Glsi02g0492 548 MobiDBLite consensus disorder prediction 280 300 - -
Glsi02g0492 548 CDD ACT_UUR-ACR-like 477 537 - -
Glsi02g0492 548 MobiDBLite consensus disorder prediction 313 362 - -
Glsi02g0492 548 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 424 IPR036638 GO:0046983
Glsi02g0492 548 MobiDBLite consensus disorder prediction 266 300 - -
Glsi02g0492 548 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 357 406 IPR011598 GO:0046983
Glsi02g0492 548 MobiDBLite consensus disorder prediction 330 347 - -
Glsi02g0492 548 SMART finulus 363 412 IPR011598 GO:0046983
Glsi02g0492 548 Pfam Helix-loop-helix DNA-binding domain 364 406 IPR011598 GO:0046983
Glsi02g0492 548 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 239 545 - -
Glsi02g0492 548 CDD bHLH_AtAMS_like 360 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0492 Glsi-ChrGlsi02 3169363 3172208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0492 55 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.646 1.62e-125 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g0492 HLH 2.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0492 02 3169363 3172208 Glsi02g0492 02 3169363 3172208 ECH