Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0489 ATGGAATTCGAAAACCTCGATGATTCGCCCATGTTCCGGCAACAGCTCCAATCCTTGGAAGAAAGTGCAGACTCATTAAGAGCCAGATGCTGGAAGTTCTACAAAGGATGTCGAAAGTACACGTGGGTTTTGCTCATATCCATGGAATTGTTAATTAAGCTTTGTTCTTTTACCACTTCCTTCTTGATTTGCCGGCCTTTTGGAGACGATTTTCTACATAGTCTCTTGCATGTGTTGGAAGGGCTTGGAGAGGAATATGATGGGGACATTGCATTTGCAAGTGCCCTTGAAACTTTTGGAGGAGGGCAGAGTGATCCTCTTTTTGAGATTTTGGGAGGATCTGTTATGACCAAATTCACTATTGCTTTGAGAGAAATCAGTACGTACAAGGAACTTCTTCGGTCACAGGTAGAGCACATGCTGACTGACCGATTACTACACATCCTCAATGTTGACATCCATGAAGTCAAGGAAGCTCGAAAGCGTTTTGACAAAGCCTCCCTCACATATGATCAGGCACGTGAAAAGTTTCTGTCATTGAGGAAGAGCGCTAAGATTGATACTGTCACTGTCATAGAAGAGGAATTGCACAATGCACGAGCCTCATTTGAGGAAGCCCGTTTCAACCTGGTCAGTGCTCTCAACCATGTCGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCCCTGGAGTCATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCAACAGATGGAACCTTTCATTAGCGAGGTTTTGACTTATGCACAAAAGTCAAGAGAAAGTTACAATACAGAGCAGGTTTCTCTTAATGAAAGAATTCAAGAGTACAAAAAACAAGTTCATCAAGAAAGTAGGTTGTCCGTGAATGGCACTTACGGTTCTCCTAATAGAGACTGTATGCAGCCTTTTTCTAAGGTATCAAATGAAGTGGCCGATGCAGTAATGGAATCTGCTGCAAATGGAAAGGTTCAAATTATTCGACAAGGATATCTCTCAAAGCGATCCTCCAATCTGAGAGGTGCCTGGAAGAGAAGGTATTTTGTTCTTGACAGTCGAGGAATGTTATACTACCAACGTAAACCAGGGAACTGGTTGCATGGTGGCGGTCAACCATCTGGACCAAGGAATAGTGCCACCGAAATTGGTTCTGGGCTTCTGAGCCGACTTGCTCATCACCATGGGAGTGTCCATGATGAAAGATCTGCAGCACGTCGTGCAGTGAACCTGCTTACGTCAACGATCAAGGTTGATGCTGAACAATCAGATTTAAGATTTTGCTTCAGGATTATTTCACCAGTAAAGAACTTCACGTTGCAGGCAGAAAATGCGCTGGACCAGATGGATTGGATTGAAAAGATAACTGGAGTAATTACCTCCCTGTTGAATGCCCAGACTCTAGAAATGGCAGTGACTGAGGCACATGCATCAAAGAACTTCACCTCGAATATCAACTTACGTTCAACTAAAAGTTTGCAGTGGAATAAACAAGGTGTAAGAGGTGAACAGCCAATTGATGTTCTTAAAAGGGTATGTGGGAATGACAAATGTGCTGATTGTGGTAAACCCGATCCAGACTGGGCGTCCTTAAACCTCGGCATTCTTATATGCATCGAATGTTCTGGTGTTCACCGTAATCTTGGTGTACATATATCCAAAGTAAGATCACTGAAACTTGATGTGAAAGTCTGGGACTCCTCTGTTTTAAGCATGTTTCAGTCACTGGGTAATCTCTTTGCAAACTCAGTTTGGGAGGAGTTGTTGCATTCACCAAATATTTCGCAAACTGATGATATACCTGTTAGTTCATTTAAGGCAAAAACTAAGTTATTTCATGCAAGAAAACCAGAACATGATGATCCTATTGCACTGAAGGAGAGGTACATTCACGCGAAGTATTCCGAGAAAGTCTTTGTTCACCGGATGAAGAAAAACCCACGTATCCTTTCAGTGTCACAACAGGTGTGGGAAAGCATCTGTGCCAATGACAAGAGAGCAGTGTACCGGCATCTCATCAAGTCAAATGTGGATCTCAATGCTATCAGTGGGCAAGCATCATATGGTGACTCTTTCTTCATGCCTTCTACAAGTAATATAAACTCATCATCTAAAGCTGAAAATCAGCTGATAGAGGATATACCAGATGGTTCTAGTGTGCTTCATCAGGCATGCCTAACTGCTGATGTAAGCATGGTGGAACTTCTCCTACAGTATGGTGCAGAGATAAATGCTTCTGATTCAAGAGATCAGACACCATTGCATTATTGTATTATCATAGGCAACACCGCAGCTGCAAGATTGCTTCTTATGCGGGGAGCCAATCCACATGCCGTAGATAAAGAAGGCAATACTCCTCTTGAGCTTGCATCAAGATCCGCTTCTGTTGGCAACGACATTATCACTCTCTTAACAAGCAGATGA 2436 0.429 MEFENLDDSPMFRQQLQSLEESADSLRARCWKFYKGCRKYTWVLLISMELLIKLCSFTTSFLICRPFGDDFLHSLLHVLEGLGEEYDGDIAFASALETFGGGQSDPLFEILGGSVMTKFTIALREISTYKELLRSQVEHMLTDRLLHILNVDIHEVKEARKRFDKASLTYDQAREKFLSLRKSAKIDTVTVIEEELHNARASFEEARFNLVSALNHVEAKKRFEFLEAVPGVMDAHLRYFQQGYQLLQQMEPFISEVLTYAQKSRESYNTEQVSLNERIQEYKKQVHQESRLSVNGTYGSPNRDCMQPFSKVSNEVADAVMESAANGKVQIIRQGYLSKRSSNLRGAWKRRYFVLDSRGMLYYQRKPGNWLHGGGQPSGPRNSATEIGSGLLSRLAHHHGSVHDERSAARRAVNLLTSTIKVDAEQSDLRFCFRIISPVKNFTLQAENALDQMDWIEKITGVITSLLNAQTLEMAVTEAHASKNFTSNINLRSTKSLQWNKQGVRGEQPIDVLKRVCGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLKLDVKVWDSSVLSMFQSLGNLFANSVWEELLHSPNISQTDDIPVSSFKAKTKLFHARKPEHDDPIALKERYIHAKYSEKVFVHRMKKNPRILSVSQQVWESICANDKRAVYRHLIKSNVDLNAISGQASYGDSFFMPSTSNINSSSKAENQLIEDIPDGSSVLHQACLTADVSMVELLLQYGAEINASDSRDQTPLHYCIIIGNTAAARLLLMRGANPHAVDKEGNTPLELASRSASVGNDIITLLTSR 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0489 811 SMART 5bar 32 256 IPR004148 GO:0005515|GO:0005737
Glsi02g0489 811 SUPERFAMILY ArfGap/RecO-like zinc finger 508 646 IPR037278 -
Glsi02g0489 811 Gene3D Arfaptin homology (AH) domain/BAR domain 3 45 IPR027267 -
Glsi02g0489 811 Gene3D Arfaptin homology (AH) domain/BAR domain 53 288 IPR027267 -
Glsi02g0489 811 ProSiteProfiles Ankyrin repeat region circular profile. 753 785 - -
Glsi02g0489 811 ProSiteProfiles Ankyrin repeat region circular profile. 720 751 - -
Glsi02g0489 811 Pfam Putative GTPase activating protein for Arf 511 645 IPR001164 GO:0005096
Glsi02g0489 811 Gene3D - 659 811 IPR036770 -
Glsi02g0489 811 CDD BAR_SFC_plant 15 253 IPR035670 -
Glsi02g0489 811 SUPERFAMILY PH domain-like 331 474 - -
Glsi02g0489 811 SMART ANK_2a 720 749 IPR002110 GO:0005515
Glsi02g0489 811 SMART ANK_2a 753 782 IPR002110 GO:0005515
Glsi02g0489 811 Gene3D - 323 477 IPR011993 -
Glsi02g0489 811 PRINTS HIV Rev interacting protein signature 561 582 IPR001164 GO:0005096
Glsi02g0489 811 PRINTS HIV Rev interacting protein signature 519 538 IPR001164 GO:0005096
Glsi02g0489 811 PRINTS HIV Rev interacting protein signature 538 555 IPR001164 GO:0005096
Glsi02g0489 811 ProSiteProfiles Ankyrin repeat profile. 720 752 IPR002110 GO:0005515
Glsi02g0489 811 ProSiteProfiles PH domain profile. 330 464 IPR001849 -
Glsi02g0489 811 SUPERFAMILY BAR/IMD domain-like 4 353 IPR027267 -
Glsi02g0489 811 Coils Coil 156 176 - -
Glsi02g0489 811 ProSiteProfiles Ankyrin repeat profile. 753 785 IPR002110 GO:0005515
Glsi02g0489 811 CDD ArfGap 510 638 - -
Glsi02g0489 811 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 489 652 - -
Glsi02g0489 811 ProSiteProfiles ARF GTPase-activating proteins domain profile. 507 651 IPR001164 GO:0005096
Glsi02g0489 811 SMART PH_update 331 466 IPR001849 -
Glsi02g0489 811 SUPERFAMILY Ankyrin repeat 665 799 IPR036770 -
Glsi02g0489 811 Pfam Ankyrin repeats (3 copies) 725 809 IPR002110 GO:0005515
Glsi02g0489 811 Pfam BAR domain of APPL family 114 270 IPR004148 GO:0005515|GO:0005737
Glsi02g0489 811 Pfam PH domain 332 463 IPR001849 -
Glsi02g0489 811 PANTHER CENTAURIN/ARF 4 809 IPR045258 GO:0005096
Glsi02g0489 811 Coils Coil 265 285 - -
Glsi02g0489 811 SMART arf_gap_3 507 651 IPR001164 GO:0005096
Glsi02g0489 811 CDD PH_ACAP 333 468 - -
Glsi02g0489 811 Gene3D Arf GTPase activating protein 488 652 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0489 Glsi-ChrGlsi02 3136066 3148538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0489 519 656 C2H2 Transcription Factor Family AT4G21160 41.007 1.40e-20 92.0