Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0486 ATGCCTTTTGAAATAATGGACCAGAGGGGCGTATCTGCCTCATCACACTTTTTTGATGACGTTTCCTTTTTCTCTGAGAGGAATACCGGATTGCAGAAGCCAAAATCTATTCGTGACCATTATGAACAAGTTCCTGGTGAAGACCTCATTTCCACATCTTTATTGCAATATTTCCCGACAATGTGTATGCAATTCATCCGTACATTCTGGGAATTTTTTAGTTTTGGTATAGCTGGGATCATTAATGGAGGTTTCATGAGCTTAGATGCTGCACTCTGCTGGATTGAAGCTCAGATTTGAAAGAATGGAATGGTATCATCACCTAGCAGCATTTTGAATGCTTTTTCACCTCTAGAAATTAGTGCAAAGACAGGTTTTCCAATGTCACAGACAGGTCAGTCTGGAGAAATTACAGAAAAGCTACACGATGGTGGAGAAGAAGACATTATTGATATGTTGAAGGCTTCCAAGGAATCACTAAAGTATCATCCCAGATCACAGTCTAATGTGTGTATGCAGTCAGCAACTACCTGTGGTATAATTGGGACTAAGATTGTCACTAATGCTGCCTCTCATGAAAGTAGCCTTTTCTCAAGTTCACTGTCTGAGATATTTAGCCGAAAGATGAGGTTTACAGGGAATGATGTTCTGCCTCATCAGCCTGTTACTGTTGGTTCCCTCCCTGAGGAGGAACCATATAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCCGATGAAGATGATCTGTTTTCTGGTGTCGTTGATGACTTGGGAAGCAATACTCACGCCAGAACTGGCGATGACTTAGAAGATTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGAGATAGCCATCTAAGTTTAGGAAAAAAGATCAGTGGTCTAGATGAAGATTCTGGTTACTTTGGAGGTTTAAAAGGAAAACTTCCTTTTGGTGAACAACCTTCTAGAACACTTTTTGTTAGAAACATCAACAGCAATGTTGAAGATTCTGAGCTAAAGTCGCTCTTTGAGCAATATGGAGATATCCGTACCACTTATACAGCCTGCAAGCACCGTGGATTTGTTATGATTTCTTATTATGACATAAGAGCAGCACAAAATGCCATGAAAGCTCTTCAAAATAGGTCATTGAGGTCTAGGAAACTTGACATACATTATTCAATACCAAAGGTTAATGCTCCAGAGAAGGATATTAGCCATGGTACACTGTTGCTATCTGGTCTTGATTCTTCTGTTTCAAATGACGAGCTTCAACAAATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATCTCCAGAAGTAAATCATCACAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCTTTGAACAGGAGTGAAATTGCTGGGAAGCAGATCAAGCTTGAACCCGGCCATCCTAGGGGTGGAACATGTCTGATGCAGCAATCTCTGAAGGGGCAGGATGAACCTGATCTAAGTCAAAGTATATGTGACAACTTATCTTTAAGACCTAATGCAATAGTGTCTTCTGGAGTAATTGCGTCTGGCTGCTTGGATAATGGATCAAATCAGGGATTTCAATTACCAATACGGCAAACTATGAATCCCTTATCTATAAATGCATTCTCACGTGTGAATTCTAGCATTCACAACACAGTGAGAGGGGTATCTGCTGGAAAAGTTTCTGGTGTTTGTGAGTCCAGTAAATATGTTGATGCTATGAAATTTGCATCTATTCCTCGACTCCATCCTCATTCCCTCCCTGAGTATCATGATAGTTTAGCTAATGGTAATCCTTACAACTTCTCAAGCACTATCAGCAACATGTCTGGCAATATTGGTCCTGGAGTGACAGAAAGCTCTGATAGCAGGCACATGCCAGGAATGGGTTCTTCTGGGAACCTTACGGACTTTAATGGAGGAGGAAATGGGAACCACCCTAATCATGGGCTTTATCACATGTGGAACAGCTCTAATTTGCACCAGCAGCCTCCTCCAAATTCCTTGCTTTGGCAGAAAACACCATCATTTGTTAATAGTGCTGCTGCTCCTTGCCTTCCACAGATGCCCAGCTTTCCCAGAACAACACCTCATATGCTGAGAGCATCACATGTGGATCATCATGTTGGATCAGCCCCAGTTGTTACAGCCTCCCCCTGGGACAGGCAACATTCTTATTTGGGAGAGTCCTCTGAATCTTCTGGTTTTCACTTGGGCTCTCTTGGGAGTGCAGGCTTCCCTGGTACATGGCAATTGCATCCTCCAGATTTTTCTTCTCACAACATGTTTTCTCATGTTGGTGGGAATGGCATGGAATTATCGTCCAATGCTGGGCAGAGCTCTCCAAATCAGCTGTCTCATGTTTTCCCTGGGAGACATCCCTTGACTTCAATGTGTAAATTTGATTCTACCAATGATCGAATGAGAAACCTATATCACCGTAGAAGTGATGCTAATACTAACAATGCTGATAAAAAACAATTTGAACTTGACCTGGGCCGCATATTGCGCGGGGAAGACAACCGAACAACACTTATGATAAAGAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTTTATATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTACGCATTCATCAACATGACTGATCCTAGTCAGATAATTCCCTTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGAAAAGCTGCTCTTATTGCGCATTTTCAGAATTCAAGCCTAATGAATGAAGATAAGCGTTGCCGCCCTATTCTTTTCCACACAGAAGGCCCAAATGCTGGTGATCCGGAACCCTTCCCCATGGGTACCAATATTAGATCGAGACCTGGAAAATCTCGTACTTGTGGTAATGAGGAGAATCGCAGCCAAGGGAGTCCTTCAACTTCGGCAAGTGGAGAGGAGTCTACTAATGGAACAGATTCTTCAGTGGGCTCTTCAAGAAACTCTGACTGA 3087 0.4189 MPFEIMDQRGVSASSHFFDDVSFFSERNTGLQKPKSIRDHYEQVPGEDLISTSLLQYFPTMCMQFIRTFWEFFSFGIAGIINGGFMSLDAALCWIEAQIXKNGMVSSPSSILNAFSPLEISAKTGFPMSQTGQSGEITEKLHDGGEEDIIDMLKASKESLKYHPRSQSNVCMQSATTCGIIGTKIVTNAASHESSLFSSSLSEIFSRKMRFTGNDVLPHQPVTVGSLPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVVDDLGSNTHARTGDDLEDFDLFSSGGGMELEGDSHLSLGKKISGLDEDSGYFGGLKGKLPFGEQPSRTLFVRNINSNVEDSELKSLFEQYGDIRTTYTACKHRGFVMISYYDIRAAQNAMKALQNRSLRSRKLDIHYSIPKVNAPEKDISHGTLLLSGLDSSVSNDELQQIFGFYGEIKEIYESPEVNHHKFIEFYDVRAAEAALRALNRSEIAGKQIKLEPGHPRGGTCLMQQSLKGQDEPDLSQSICDNLSLRPNAIVSSGVIASGCLDNGSNQGFQLPIRQTMNPLSINAFSRVNSSIHNTVRGVSAGKVSGVCESSKYVDAMKFASIPRLHPHSLPEYHDSLANGNPYNFSSTISNMSGNIGPGVTESSDSRHMPGMGSSGNLTDFNGGGNGNHPNHGLYHMWNSSNLHQQPPPNSLLWQKTPSFVNSAAAPCLPQMPSFPRTTPHMLRASHVDHHVGSAPVVTASPWDRQHSYLGESSESSGFHLGSLGSAGFPGTWQLHPPDFSSHNMFSHVGGNGMELSSNAGQSSPNQLSHVFPGRHPLTSMCKFDSTNDRMRNLYHRRSDANTNNADKKQFELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPSQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGTNIRSRPGKSRTCGNEENRSQGSPSTSASGEESTNGTDSSVGSSRNSD 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0486 1028 Gene3D - 316 408 IPR012677 -
Glsi02g0486 1028 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 410 483 IPR000504 GO:0003723
Glsi02g0486 1028 FunFam MEI2-like protein 5 isoform 2 314 408 - -
Glsi02g0486 1028 MobiDBLite consensus disorder prediction 767 799 - -
Glsi02g0486 1028 MobiDBLite consensus disorder prediction 621 655 - -
Glsi02g0486 1028 CDD RRM3_MEI2_like 855 940 IPR034454 -
Glsi02g0486 1028 MobiDBLite consensus disorder prediction 767 797 - -
Glsi02g0486 1028 MobiDBLite consensus disorder prediction 985 1028 - -
Glsi02g0486 1028 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 398 IPR000504 GO:0003723
Glsi02g0486 1028 MobiDBLite consensus disorder prediction 621 653 - -
Glsi02g0486 1028 Gene3D - 846 939 IPR012677 -
Glsi02g0486 1028 PANTHER RNA RECOGNITION MOTIF-CONTAINING 104 1016 - -
Glsi02g0486 1028 SMART rrm1_1 326 394 IPR000504 GO:0003723
Glsi02g0486 1028 SMART rrm1_1 854 930 IPR000504 GO:0003723
Glsi02g0486 1028 SMART rrm1_1 411 479 IPR000504 GO:0003723
Glsi02g0486 1028 SUPERFAMILY RNA-binding domain, RBD 854 939 IPR035979 GO:0003676
Glsi02g0486 1028 CDD RRM1_MEI2_like 324 399 IPR034453 -
Glsi02g0486 1028 MobiDBLite consensus disorder prediction 963 1028 - -
Glsi02g0486 1028 FunFam Protein MEI2-like 1 409 503 - -
Glsi02g0486 1028 Gene3D - 409 502 IPR012677 -
Glsi02g0486 1028 Pfam RNA recognition motif 2 852 948 IPR007201 -
Glsi02g0486 1028 SUPERFAMILY RNA-binding domain, RBD 322 483 IPR035979 GO:0003676
Glsi02g0486 1028 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 413 477 IPR000504 GO:0003723
Glsi02g0486 1028 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 391 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0486 Glsi-ChrGlsi02 3097327 3103615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0486 320 476 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 3.42e-08 55.5