Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0443 ATGTCTATGTCTTTTTCTTGTTGGAGATACGTGAGAGGCAAGCTTACCATTACAGCTACACGTAGCAGGTTTGCATGTGAAGCTGATATTCTGGGTGTCAAAGGTCTGGAATACCCAGATACGAACCCATTGTCGCATTTGAAACGAACCGACTGGCACAGATCGCTTAATTACTGCACATGTAGTCTAGCTGGTAATGGAGAGGAAATCGTCACTCAGGGTTTTCTTCTGCTTCCTCCTCATTGTCTTAGCTGCTCAGCAGAAGTGATGGTAGAGACAGAGGGAAGGATGTGCGAGTCACAGAGCCATGGGTTCTCGGGTGCATGCTTGATAGACCACAACTGTGCTACGATCTGCAGGAATGAAGGTTTCTCTGGTGGCAAATGCCGAGGATTCCGTCATCGCTGCTTTTGCACTAGGGCAATTCTATTTCCGGGCGGGAGTGATGGACAGCGCACGGTTTGGGGTTTCGTTCTTGTTGCTTATTCTGCTTGCTTCTGGTTTAAGTACCTAATACTGGAGTTTTCCTTTTTGCTTTTTACAAATGAACTTGAATTATATACAGTTGATGATCTGACCAAAAATCCGAAAAAGGTTCCATTCCCCACATATCGCCCAAAAGTCTCAGACTCTCTAGCCTTAGCCATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGAGCTTGGACCAAAGAGGAAGACGAACGCCTCATTAACTACATCAAGCTTCATGGGGAAGGCTGTTGGAGGTCTCTTCCCAAAGCCGCTGGCTTGCTTAGATGTGGCAAGAGTTGTAGACTCAGATGGATTAACTACCTCCGACCTGATCTCAAGAGAGGAAATTTCACTGACGAAGAAGACGACCTCATCATTAACCTCCACAGCTTACTTGGAAACAAATGGTCTCTAATAGCCGCGAGGTTACCGGGAAGAACCGATAATGAGATCAAGAACTACTGGAACACCCACATCAAGCGCAAGCTCTATGGCCGCGGAATCGACCCTCAGACTCACCGGCCACTCAACGCCGCCGCCGTAACAACCACCGCTGTCACACCCCTTTCCATCACTAACAGTAACAAGAGGATTACCAAGGATAGCAGTAGCAGCAGCAACACCGCCGCCAACAATAACAGCAATTTTCAGTTAGTAACGAACTTGGTTAGTGCCTGCGGCACCAATCCAGAATCTGGCGGTGAGGATTCAAATAGCAGCAGCGGCGTTACCACAGAGGAAGCCTATCCTCTTCATCAGCTCAACTTAGAGCTCTCCATAGGCCTTCCCCAAGTTTCAAACTCCAATACCAATGTCGTCGTCCTTAACCCAGACATGAAGTTGAAACGACAACGACAAGAACAAGGAGGAGAACAGGTTGTGTTTCAGCAGTATGGGAAGGGTAGTAGTAGCGAAGGTGTGTGTCTGTGTTGCAGTCTAGGGTTTGAAAGCAGCAGCAGCAGTAGTAACCAAGCATGTAGCTGTAAAGCCATAAGGAGTACTACTACCACCACTACTACTACTGCATCGGAAAACCTGTTTAGATTTTACAGACCCTTGAATATTTAG 1572 0.4714 MSMSFSCWRYVRGKLTITATRSRFACEADILGVKGLEYPDTNPLSHLKRTDWHRSLNYCTCSLAGNGEEIVTQGFLLLPPHCLSCSAEVMVETEGRMCESQSHGFSGACLIDHNCATICRNEGFSGGKCRGFRHRCFCTRAILFPGGSDGQRTVWGFVLVAYSACFWFKYLILEFSFLLFTNELELYTVDDLTKNPKKVPFPTYRPKVSDSLALAMGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDDLIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYGRGIDPQTHRPLNAAAVTTTAVTPLSITNSNKRITKDSSSSSNTAANNNSNFQLVTNLVSACGTNPESGGEDSNSSSGVTTEEAYPLHQLNLELSIGLPQVSNSNTNVVVLNPDMKLKRQRQEQGGEQVVFQQYGKGSSSEGVCLCCSLGFESSSSSSNQACSCKAIRSTTTTTTTTASENLFRFYRPLNI 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0443 523 Gene3D - 229 281 - -
Glsi02g0443 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 276 IPR017930 -
Glsi02g0443 523 FunFam MYB-related transcription factor 228 281 - -
Glsi02g0443 523 Pfam Myb-like DNA-binding domain 282 326 IPR001005 -
Glsi02g0443 523 Pfam Myb-like DNA-binding domain 229 276 IPR001005 -
Glsi02g0443 523 MobiDBLite consensus disorder prediction 395 414 - -
Glsi02g0443 523 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 216 436 - -
Glsi02g0443 523 Gene3D - 284 331 - -
Glsi02g0443 523 FunFam Myb transcription factor 283 352 - -
Glsi02g0443 523 Pfam Gamma-thionin family 96 140 - -
Glsi02g0443 523 ProSiteProfiles Myb-like domain profile. 224 276 IPR001005 -
Glsi02g0443 523 SMART sant 228 278 IPR001005 -
Glsi02g0443 523 SMART sant 281 329 IPR001005 -
Glsi02g0443 523 SUPERFAMILY Homeodomain-like 228 323 IPR009057 -
Glsi02g0443 523 ProSitePatterns Gamma-thionins family signature. 96 119 IPR008176 GO:0006952
Glsi02g0443 523 SMART gth_4 97 141 IPR003614 GO:0006952
Glsi02g0443 523 CDD Knot1 107 139 IPR003614 GO:0006952
Glsi02g0443 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 277 331 IPR017930 -
Glsi02g0443 523 SUPERFAMILY Scorpion toxin-like 96 140 IPR036574 -
Glsi02g0443 523 CDD SANT 231 276 IPR001005 -
Glsi02g0443 523 PRINTS Purothionin signature 97 112 IPR008176 GO:0006952
Glsi02g0443 523 PRINTS Purothionin signature 127 141 IPR008176 GO:0006952
Glsi02g0443 523 CDD SANT 284 327 IPR001005 -
Glsi02g0443 523 Gene3D - 96 141 IPR036574 -
Glsi02g0443 523 ProSiteProfiles Myb-like domain profile. 277 327 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0443 Glsi-ChrGlsi02 2829470 2837869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0443 216 431 MYB Transcription Factor Family AT2G16720 61.574 7.78e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g0443 Myb_DNA-binding 9.5e-15 CL0123