Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0421 ATGTATTATGATGAGAACAATCTCGATTATTTAATTTGGAGCCTGCAAATTATTGGCAAGATATCTAGATCAGAAAGAGGTCACCATCGTAATATAGGCATGGCTGCCCCTCCCGTGAACCCGTTGCCGGTAGCATACCAGGCATGGACGAGTTTGGCAGTACCGGATTGGCTGAACAAAGGGGACAATGCATGGCAAATGATATCAGCTACCCTGGTTGGGATCCAGAGCATGCCAGGGCTCGTCATCCTCTACGGTAGCATTGTCAAGAAAAAATGGGCTGTGAACTCTGCTTTCATGGCTCTTTATGCCTTTGCTGCGGTAAGCATTTGTTGGGTCACTTGGGCTTATAAGATGTCCTTCGGGGAGGAGCTCTTACCCTTCTGGGGAAAAGCTGGACCAGCTTTGGGTCAGAAATTTCTCATCAACCAAGCTGCCTTGCCTGCCACGAAGCATTACTTTAAGAACGGTCAGGTGGAGACAGCTGAGATTGAGCCTTATTATCCCATGGCCACGATGGTTTGGTTTCAGTGCGTTTTTGCAGCCATCGCTGTTGTTCTTCTGGCGGGCTCAGTGCTGGCTAGGATGAATTTCAAGGCTTGGATGATGTTTGTGCCTCTCTGGCTCACTTTTTCCTACACCGTTGGTGCTTTCAGCGTTTGGGGTGGTGGATTCCTGTTTCATTGGGGTGTTATGGACTATTCTGGTGGCTATGTCATTCATCTTTCTTCTGGGATTGCGGGATTCACCGCTGCCTATTGGGTGGGACCAAGATCGAAGAGGGACAGAGAGAGATTCCCGCCGAACAATGTGTTGTTAACGTTGGCAGGAGCAGGGCTACTATGGATGGGATGGGCAGGATTCAACGGAGGAGACCCATACTCAGCAAACACAGACTCGTCCATAGCGGTGCTCAACACCAACATCTGCGCCGCCACAAGCCTGCTGGTGTGGACGTGGCTTGATGTCATTTTCTTCAAGAAACCCTCCGTTATCGGAGCCGTTCAGGGCATGATCACCGGTCTCGTTTGCATCACTCCCGGCGCTGGTCTGGTTCAAGGGTGGGCTGCCATAGTGATGGGAGTCCTATCAGGCAGTGTGCCATGGTTCAGCATGATGGTATTAGGGAAGAAGTTGAAAGTGTTTCAAATGGTGGATGACACTCTGGCCGTGTTCCACACTCACGCAGTGGCGGGTCTTCTAGGCGGCATCCTCACAGGCCTATTCGCGGAGCCTCGTCTAAGTGCACTCTTCCTCCCCGTCACTAACTCCAGAGGAGGCGTCTACGGTGGCTCAGGAGGAGTTCAAATCCTTAAACAAATCGTGGGAGGCTTATTCATCATCGGATGGAACCTCGTGGTTACTTCAATTATCTGTGTGGTTATAAACTTGATCATCCCACTGAGAATGTCGGACGAGGAGTTGCTGATTGGGGATGATGCGGTTCATGGCGAAGAAGCATATGCCTTGTGGGGTGATGGCGAGAAGCTTAGTATCTATTCAGAACAGAGCACCCACCATGGAGTCACATCCAGCGGTGCCACTCAGGGAAGCAGGTGTCCAACTGAATTTTCCTCGGATATCAAAGAGCCTAACAATATGTTTGACCCAAAATTTATCGGGGATCCTCTAAAACTAATGACAAGGTGGCTGCTATTCCTCAGTCTCTTAAGACTCAGTTATGCAATCCAAGATCCTGATGTGGAAGGTGAAGCTTTGTTTGAATTTCGGAAGGCTCTCAATGATTCCAACCATCGAATAGCAGATTGGAATAATTTCTTTGTGAGCCCATGCTTTAGTTGGTCCGAGGTCACTTGTAGAAACGGACATGTTATATCCCTGAGCCTGGCTTCAAATGGGTTTTCTGGAACACTTTCTCCTTCAATCACCAAATTGAAATATTTGGTTAGCTTGGAGTTGCAGAACAATCACCTTTCAGGCTCGTTACCTGAATACATTGGCAACTTGACGAACCTACAATATCTAAATCTTGCAGACAATAATTTTCATGGTTCAATACCAGCTTCATGGGGTCAACTTTCCAGTCTAAAGCATCTGTTATTGAAAGGCAATGGCTTATCCGGACCAATACCAGAAACTATTGCTAATGTTAGTGGGTTGGCAGAACTGGATCTTTCTTCTACTGACCTAACTGGAAACATCCCAATGCAACTCTTTTCTCTTCCAAGTTTTAACTTTTCAAACACGCACCTTCATTGTGGTTCTCGCTTCCAGCAGCCTTGCTTGTCTAATTCTGCTCTTCCAGCTTCAAAAAAAAAATCGAAACTTGCAGTTTTTGCAAGTTTTGCTAGTTGCGGTGCATTTGCACTTGTTTGTCTTGGGGCTATCTTTGCATATAGATGCCATTACATGCGCAGAAACAAAAATGAAGTCTTTGTGGATGTTTCAGGCGAAGATGAAAGCAAAATTTCCTTGGGCCAATTGAGAAGATTTTCTTTGCGCGAACTCCAACTCGCTACTAAAAATTTCAGCGAAAGCAATGTAATTGGCCAGGGAGGCTTTGGAAAAGTTTACAAAGGAGTACTCTCAGATGATACTAAAGTTGCTGTTAAACGTCTGACTGATTATGATAATCCTGGTGGAGAGGCTGCATTCCAAAGAGAAGTTGAACTCATAAGTGTTGCAGTTCATAGGAATCTTCTACGATTAATCGGGTTCTGTACAACCTCAACTGAAAGAATCCTTGTATATCCTTTCATGGGAAATCTAAGTGTAGCATACCGGTTGCGAGATTTAAAACCCGAGGAGAAGGGGTTGGATTGGCCAACGAGGAAGCGTGTGGCTTTTGGTACAGCCAACGGATTGGAGTATCTACACGAGCAATGTATTCCCAAGATATTACATCGTGATCTAAAAGCTGCAAACATCCTATTAGATGATGACTTTGAAGCTGTTCTTGGAGATTTTGGGCTGGCTAAGCCGGTAGATACGAGGTTGACTCATGTGACGACTCAGGTGCGGGGTACAATGGGTCATATTGCCCCAGAATATCTGTCCACTGGGAAATCGTCTGAGAAGACAGATGTCTTTGGATATGGTATAACCCTTCTTGAACTAGTCACCGGTCAGCGTGCCATAGACTTATCTCGGCTTGAAGAGGAGGAGGATGTTCTCCTGCTCGATCACATAAAAAAGCTGCTGAGAGAGAATCGGCTGGAAGACATAGTGGATAGGAATTTGGAGAGTTACGATCCTAAAGAAGTAGAGACGATTGTGCAGGTAGCATTGCTTTGTACGCAAGGGATGCCGGAGGATCGTCCGAGCATGGGAGAGGTGGTAAAAATGCTGCTGGGAGTGGGTTTGGCAGAGAGATGGGCAGAATGGGAGCAACTTGAAGACGTGAGTAATCAGGAATTCTCCCTGCTCTCTCACCAATTTGCTTGGGCTGACGAATCTTCTCATGATCAAGAGGCTATTCAGCTTTCCAGAGCAAGATAA 3459 0.4655 MYYDENNLDYLIWSLQIIGKISRSERGHHRNIGMAAPPVNPLPVAYQAWTSLAVPDWLNKGDNAWQMISATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVSICWVTWAYKMSFGEELLPFWGKAGPALGQKFLINQAALPATKHYFKNGQVETAEIEPYYPMATMVWFQCVFAAIAVVLLAGSVLARMNFKAWMMFVPLWLTFSYTVGAFSVWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKRDRERFPPNNVLLTLAGAGLLWMGWAGFNGGDPYSANTDSSIAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFSMMVLGKKLKVFQMVDDTLAVFHTHAVAGLLGGILTGLFAEPRLSALFLPVTNSRGGVYGGSGGVQILKQIVGGLFIIGWNLVVTSIICVVINLIIPLRMSDEELLIGDDAVHGEEAYALWGDGEKLSIYSEQSTHHGVTSSGATQGSRCPTEFSSDIKEPNNMFDPKFIGDPLKLMTRWLLFLSLLRLSYAIQDPDVEGEALFEFRKALNDSNHRIADWNNFFVSPCFSWSEVTCRNGHVISLSLASNGFSGTLSPSITKLKYLVSLELQNNHLSGSLPEYIGNLTNLQYLNLADNNFHGSIPASWGQLSSLKHLLLKGNGLSGPIPETIANVSGLAELDLSSTDLTGNIPMQLFSLPSFNFSNTHLHCGSRFQQPCLSNSALPASKKKSKLAVFASFASCGAFALVCLGAIFAYRCHYMRRNKNEVFVDVSGEDESKISLGQLRRFSLRELQLATKNFSESNVIGQGGFGKVYKGVLSDDTKVAVKRLTDYDNPGGEAAFQREVELISVAVHRNLLRLIGFCTTSTERILVYPFMGNLSVAYRLRDLKPEEKGLDWPTRKRVAFGTANGLEYLHEQCIPKILHRDLKAANILLDDDFEAVLGDFGLAKPVDTRLTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDLSRLEEEEDVLLLDHIKKLLRENRLEDIVDRNLESYDPKEVETIVQVALLCTQGMPEDRPSMGEVVKMLLGVGLAERWAEWEQLEDVSNQEFSLLSHQFAWADESSHDQEAIQLSRAR 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0421 1152 Gene3D Phosphorylase Kinase; domain 1 799 906 - -
Glsi02g0421 1152 Pfam Leucine rich repeat 635 693 IPR001611 GO:0005515
Glsi02g0421 1152 FunFam Somatic embryogenesis receptor-like kinase 1 907 1123 - -
Glsi02g0421 1152 ProSitePatterns Protein kinases ATP-binding region signature. 836 858 IPR017441 GO:0005524
Glsi02g0421 1152 FunFam Leucine-rich repeat receptor-like protein kinase 566 723 - -
Glsi02g0421 1152 ProSitePatterns Ammonium transporters signature. 233 258 IPR018047 GO:0008519|GO:0016020|GO:0072488
Glsi02g0421 1152 SUPERFAMILY Protein kinase-like (PK-like) 808 1103 IPR011009 -
Glsi02g0421 1152 Pfam Protein kinase domain 831 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0421 1152 Gene3D Ribonuclease Inhibitor 566 750 IPR032675 -
Glsi02g0421 1152 Gene3D Transferase(Phosphotransferase) domain 1 907 1122 - -
Glsi02g0421 1152 FunFam Somatic embryogenesis receptor kinase 1 799 906 - -
Glsi02g0421 1152 Pfam Ammonium Transporter Family 64 488 IPR024041 GO:0008519|GO:0016020|GO:0072488
Glsi02g0421 1152 SMART serkin_6 830 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0421 1152 ProSitePatterns Serine/Threonine protein kinases active-site signature. 953 965 IPR008271 GO:0004672|GO:0006468
Glsi02g0421 1152 Pfam Leucine rich repeat N-terminal domain 568 606 IPR013210 -
Glsi02g0421 1152 NCBIfam ammonium transporter 62 488 IPR001905 GO:0008519|GO:0016020|GO:0072488
Glsi02g0421 1152 Gene3D Ammonium transporter AmtB like domains 44 491 IPR029020 -
Glsi02g0421 1152 PANTHER AMMONIUM TRANSPORTER MEP2 50 498 IPR001905 GO:0008519|GO:0016020|GO:0072488
Glsi02g0421 1152 FunFam Ammonium transporter 45 491 - -
Glsi02g0421 1152 SUPERFAMILY L domain-like 570 739 - -
Glsi02g0421 1152 SUPERFAMILY Ammonium transporter 57 470 - -
Glsi02g0421 1152 ProSiteProfiles Protein kinase domain profile. 830 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0421 Glsi-ChrGlsi02 2699024 2709131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0421 547 1152 Receptor kinase-like Gene Family AT5G10290 57.307 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi02g0421 Ammonium_transp 2.3e-80 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0421 02 2699024 2709131 Glsi02g0421 02 2699024 2709131 ECH