Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0400 ATGGGCAAGGAAAATTTTTCAGAAACAGAAAAGAAAGAAGCCAGCGATGATGGATCCTCAACTTTTGAGACCAAGGGTTTAGAATCTAACTCTCGAGATAGTCTGGAGAAGGAGGCAGGCTGGGCAAATTGTCGAGTGTGCCAATGTGCTGAATCTGATAAAAGGGGAGATGCGGCACTAGAATTTTTGGGCATCACTCCAGTAAAAGAAGTGTGTAAAAGTAACAAGGAAGTAAGGCCAGATGGCGAGGAAATTGCAAAGGACATGTCTCTTACAGGAAATGTTGGAAGCAAATCTGGGATAGTGGAGTTTGTAAGCCCTGATGGGGAGGTTTTCATTTGTAAAACTGATTTCGAAATGGCTCTGTCTTGTCATGGGACATTAATTGAACTTGGTTGTTGCTGTAAAAATGACCTTGCTTTAGTACACTATGCTTGTGCGCTCAAATGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATTTGGCAAACAACATCAAAATTTCTGACTTCAACAAGGTTATTGATTCTTTGAAGGAGTATGAAGCATTGAGGGAAAGAACTGCCAATTGGGAGCCCTACCCTGCTCAAGTTCATGCAAATACTGGTGTGGATCCTGATGCTGTTGTTGCTATCCGAAGGCAACGGCTAAGTGAGATTGCACTATGGTTTTTTCCACTTAATAGCAGTAACAATAACAATGTGGACACAGTTTTACCGGTTTTTTCTGAACAACCTTTAAATACTGTTACTGAAGATCCCACCCCTGCTCAAAATCCTGCAACTAGGTGGGCCATAGAAGGTACTGGGATCCTGCTTGCTACTGGGCTACTTACTATAACCCTTGCATGGCTAATTGCTCCTCGTGTTGGAAAGAAAACTGCAAGAAATGGTCTTCATATCCTACTTGGAGGCATTTGTGCTTTGACAGTTGTGGTCTTCTTCCGCTTCTTCGTGCTCACCAGAATTAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCACGGACACACAATGATCATCCCACTCAACTGTATTCATACCAGATTACTCAGGTTATGGGCTCTGCAAATAATAAGGCTTTCGGCTCCATTAAAGGAACAGAGCTTTTGGCAACCAAAGAGTGTTTGCCCCTTACTGATATCCTGAAAGTTAGTTTTTGCCAATTCTCTTTCGTTCTGTATGCAACTTCATGGTCATCGAGGTATCTATTTAATGGTCCATTGGCCTACGAACCTCCCGAAGTTCTTTCTCCTTCTACCATGAAAAGCCTCTGTGTTCGGTCAATCTTGGCTCCCAGTGTCAGTGCCCCAGTTGATGGCAGAGCCTTCTCCCACCGTTTAAATAGAAAGATCTTTCAGAAGCAACTTTCCTTCCACCACCGCTGCGTCGGTTTGTCTTCATTCACATGTTCTGCAACTCTATCAGCAATGCCAGAAGTAGAAGAGAAGCAAGTATTTGATGGAGAGGACGCTGCTTTGCTTGTTAAAGAGCTTAGAAAGAGCTTTAATTCGGGCAAGACAAAAAGCTACGAATGGCGGATTTCGCAGTTGAAGAGCATAGCCAAGATGCTAGAAGAGAAGGAGAAGGACATTACTGAAGCACTTGATAAGGACCTTGCCAAACCTGGATATGAAGCATATCTATCTGAGGTTTCCCAGGCAAAATCCTCATGTAGTGAGGCACTTAAAGAATTAAATCACTGGATGAAGCCTGAAAAGGTAAAGACTTCAATTACAACATATCCATCATCAGCAGAGATTGTGTCTGAACCACTGGGAGTTGTGTTGGTCATCTCAACCTGGAACTTTCCTTTCTTGTTATCAATGGATCCTGTCATTGGAGCTATTTCAGCCGGTAATGCAGTGGTCCTGAAACCATCAGAAATTGCTCCAGCAACATCATCACTGCTAGCAAATTTGCTCAAAGATTATCTAGACAACTCTGCCATAAGAGTTGTCGAAGGGGCTATTCCTGAAACGACTGCATTATTGGACCAGAAGTGGGATAAGATACTTTACACTGGTAGTGCTAAAGTAGGCCGCATTGTCATGGCTGCTGCTGCAAAACACCTTACTCCAGTGATTCTGGAACTTGGAGGGAAGTGCCCAGCTGTTGTCGATTCAAATGTCAACTTACAAGTCACTGCTAGGAGGATACTAGCAGGCAAGTGGGCATGCAATGGTGGACAAGCATGCATTTCTGTCGATTACATCATCACAAAAAGGGAATTTGCTCCAAAACTGATAGATGCTCTAAAAGAGGAACTGGAGCAGTTTTTCGGGAAAGATCCGATCAAGTCAAAAGACATTTCGCGCATTGTGAGTCCATCCCAGTTTGTGCGGCTGGTGAAGCTCTTGGAAGACGATAAGGTATCTGATAAGATTGTTTTAGGAGGTCAGAAGGATGAGAATCAATTAAGGATTGCCCCAACCATCTTATTGGATGTTCCAGAAGACTCTATGGTAATGCAAGAAGAGATATTTGGACCAATATTGCCAATCCTCACTGTAGACAACTTAGAAGATAGCTATAATATAATTAAATCTAAGCCAAAACCTCTTGCTGCATATCTCTTCACAAACGATGAGCAACTGAAGAAGGATTACGTGCAAAACATATCTTCTGGAGGGATGCTCATCAATGACACCGTCGTGCATGTTGCAACTCCTGGTCTACCATTTGGAGGAGTCGAAGAGAGTGGAATGGGTTCTTACCATGGGAAATTCTCCTTTGATGGTTTCAGCCATAAGAAGGCAGTGCTCTATAGAAGTTTTGATGTAGATTCATCCGTAAGGTACCCTCCATATAGTCCCGAAAAGCTAAGATTGTTCAAGGCCCTTACCAGTGGCAACATTGTTCGCATTATTCTTACTTTGATTGGGTGGTCTAAAGAATGA 2946 0.4284 MGKENFSETEKKEASDDGSSTFETKGLESNSRDSLEKEAGWANCRVCQCAESDKRGDAALEFLGITPVKEVCKSNKEVRPDGEEIAKDMSLTGNVGSKSGIVEFVSPDGEVFICKTDFEMALSCHGTLIELGCCCKNDLALVHYACALKWFVNHGSTICEICGHLANNIKISDFNKVIDSLKEYEALRERTANWEPYPAQVHANTGVDPDAVVAIRRQRLSEIALWFFPLNSSNNNNVDTVLPVFSEQPLNTVTEDPTPAQNPATRWAIEGTGILLATGLLTITLAWLIAPRVGKKTARNGLHILLGGICALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHNDHPTQLYSYQITQVMGSANNKAFGSIKGTELLATKECLPLTDILKVSFCQFSFVLYATSWSSRYLFNGPLAYEPPEVLSPSTMKSLCVRSILAPSVSAPVDGRAFSHRLNRKIFQKQLSFHHRCVGLSSFTCSATLSAMPEVEEKQVFDGEDAALLVKELRKSFNSGKTKSYEWRISQLKSIAKMLEEKEKDITEALDKDLAKPGYEAYLSEVSQAKSSCSEALKELNHWMKPEKVKTSITTYPSSAEIVSEPLGVVLVISTWNFPFLLSMDPVIGAISAGNAVVLKPSEIAPATSSLLANLLKDYLDNSAIRVVEGAIPETTALLDQKWDKILYTGSAKVGRIVMAAAAKHLTPVILELGGKCPAVVDSNVNLQVTARRILAGKWACNGGQACISVDYIITKREFAPKLIDALKEELEQFFGKDPIKSKDISRIVSPSQFVRLVKLLEDDKVSDKIVLGGQKDENQLRIAPTILLDVPEDSMVMQEEIFGPILPILTVDNLEDSYNIIKSKPKPLAAYLFTNDEQLKKDYVQNISSGGMLINDTVVHVATPGLPFGGVEESGMGSYHGKFSFDGFSHKKAVLYRSFDVDSSVRYPPYSPEKLRLFKALTSGNIVRIILTLIGWSKE 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0400 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 165 IPR013083 -
Glsi02g0400 981 ProSiteProfiles Zinc finger RING-CH-type profile. 103 169 IPR011016 GO:0008270
Glsi02g0400 981 SUPERFAMILY RING/U-box 129 165 - -
Glsi02g0400 981 Pfam Aldehyde dehydrogenase family 503 936 IPR015590 GO:0016491
Glsi02g0400 981 FunFam Aldehyde dehydrogenase 515 719 - -
Glsi02g0400 981 SUPERFAMILY ALDH-like 507 952 IPR016161 GO:0016491
Glsi02g0400 981 Coils Coil 533 553 - -
Glsi02g0400 981 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 716 916 IPR016163 GO:0016620
Glsi02g0400 981 MobiDBLite consensus disorder prediction 1 19 - -
Glsi02g0400 981 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 515 934 IPR016162 GO:0016491
Glsi02g0400 981 MobiDBLite consensus disorder prediction 1 38 - -
Glsi02g0400 981 FunFam Aldehyde dehydrogenase 716 916 - -
Glsi02g0400 981 PANTHER ALDEHYDE DEHYDROGENASE 507 971 IPR012394 GO:0006081
Glsi02g0400 981 SMART ringv_2 113 163 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0400 Glsi-ChrGlsi02 2563456 2572322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0400 484 981 Aldehyde Dehydrogenase Gene Family AT4G34240 67.269 0.0 688