Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0397 ATGAAGTGGGTGATCAGAAAGAATGTGAGGCTACCTGCTTTTCCATGTGGTACCCCGAGTTCCCCTCCTATATCTTACCACTCAACAACAAAAGGAAGACACCAAGGAAAGTTGCAGAAAGCAATATATTCGCTGGAAGGAACAGGGGGCATTATGGTGATTTCAGGCGCTCCCCGTGGCAACGGGAGAATTTACTGGACGACTCGACAAAACGGCGGCGAGCCATATATCAGGCTTCATGTCCAACCCCAGCTCTCGCATAAGTTCCATGTTTCAAATCAACCGAGCGGACGAAGGAAGAAGAAAAAGTTGAAGGGGAGAGAAATAGAGAGCCAGTTCGGAACGGAGGCAAGCTTAAAGCTTCCACTCGATCGAGTGAAACCAAACAGTCCTTGGAAAGTCAAGAGAGAACATCAAATGAAGGGTGAATTAGAGTTACCACCTGGGTTCAGATTTCACCCCACAGACGAGGAGCTCGTGAATCACTACTTGTGTAGGAAATGTGCCTCCCAGTCAATTGCTGTTCCCATTATCAAAGAGATTGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGCACTGTACGGTGAGAAAGAATGGTACTTCTTTTCTCCGAGGGACCGAAAATATCCAAATGGTTCGCGACCGAACCGGGCGGCTGGAAGCGGGTATTGGAAGGCAACCGGAGCAGATAAGCCGATTGGGAAGCCGAATCCACTCGGTATAAAGAAGGCACTGGTATTTTACGCGGGTAAAGCCCCTAAAGGAGTCAAAACCAACTGGATCATGCATGAATATCGCCTTGCCAACGTTGACAGATCTGCCGGCAAGAAAAACAACTCAAGGCTTGATGATTGGGTATTATGCCGAATATACAACAAGAAAGGCAAGATCGAGAAATACAATGCGGTGGATGAGAAGGCATCAAATTTGAAGTTATCTGAATTCCATGACTATGAGACCAAACCACAAATCAACGTGTACAACCAAAATAGCGTGCCGGTACTACCACCGTCGTCACCTTTCACTAATGACCAATTGTATATGGACACGTCGGATTCGGGGCCAAGGTTGCACACGGACTCGAGCTGCTCGGAGCACGTGGTTTCACCCGATATCACGTGCGACAAGGAGGTGCAGAGTGAGCCAAAGTGGAATGAGCTAGGAGGAGGAGGGTTAGGCGATGCCTTTAATTTTGAGTTCAATTACATGGATGGCCTCACGGGTGTGGACCCTTTTGCCCCTCCGGACCAGTACCAAATGAACCATCTCTCGCCATTGCAGGACATGTTCATGTTTCTGCAGAAGCCATTATGA 1323 0.4785 MKWVIRKNVRLPAFPCGTPSSPPISYHSTTKGRHQGKLQKAIYSLEGTGGIMVISGAPRGNGRIYWTTRQNGGEPYIRLHVQPQLSHKFHVSNQPSGRRKKKKLKGREIESQFGTEASLKLPLDRVKPNSPWKVKREHQMKGELELPPGFRFHPTDEELVNHYLCRKCASQSIAVPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPNPLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNSRLDDWVLCRIYNKKGKIEKYNAVDEKASNLKLSEFHDYETKPQINVYNQNSVPVLPPSSPFTNDQLYMDTSDSGPRLHTDSSCSEHVVSPDITCDKEVQSEPKWNELGGGGLGDAFNFEFNYMDGLTGVDPFAPPDQYQMNHLSPLQDMFMFLQKPL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0397 440 ProSiteProfiles NAC domain profile. 146 296 IPR003441 GO:0003677|GO:0006355
Glsi02g0397 440 PANTHER NAC TRANSCRIPTION FACTOR 56 146 339 - -
Glsi02g0397 440 FunFam NAC transcription factor 155 300 - -
Glsi02g0397 440 Gene3D NAC domain 155 301 IPR036093 GO:0003677|GO:0006355
Glsi02g0397 440 Pfam No apical meristem (NAM) protein 147 270 IPR003441 GO:0003677|GO:0006355
Glsi02g0397 440 SUPERFAMILY NAC domain 137 296 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0397 Glsi-ChrGlsi02 2552993 2558526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0397 140 439 NAC Transcription Factor Family AT1G01720 64.145 2.66e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi02g0397 NAM 2.8e-38 No_clan