Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0379 ATGGACCCCAGATTAAAGGAATCAAAGTGTCCTTTGAATGACGCTCGACCTCTAACTCCGTTTACCGGTCATTCAATGTCTATGTTTCAGATCAAAATGTTCATGTTCTGTGACGGTTTGCCATTGCCATCGTCCAACAGGATTCCTTTTCCCAATTCCCAATACAAAGTTGGGAAGCAGGCGCGAAGAGAGGTGAGAGGAAAGCGACTCGAGCCGGAGAAACGACGGCCATTGCCACGTCTCTCTGGAGGTGCCATTTTCCAGAGCCAGAGTGTAACGAGGAGGCAGATGAAGTTGACCGGAGACAGTGCGACTGTGGACGGTTGCACCGGCGACTGCGGCAGTGGTCGGACGGTGTTGGTTGGAGTGAAGTTGGATCCTCGGAGCCGTGAATTGCTTACATGGGCTCTCGTCAAAGTGGCTGAGCCTGGTGACCTTGTCATTGCGCTTCACGTTCTTGACACCATTACTGAGGGTACAGGATCGCTTCTCTCTCTTGTAAATACTTTTGATTCTGTTCTCGCCGTTTATGAAGGTTTCTGCAACTTGAAGCAGGTTGATCTCAAGCTTAAAGTATGTAGAGGTGCGTCGGTTCGGAAACTTCTAGTACAGGAGGCGAAATTGTTTGGTGCAGCGACGGTAATTGTGGGAACTTCTAAAACCCATCACACAATCCGGTCATCGTCGTCCGTTGCGAAGTACTGCGCAAAAAAATTGCCCAGGTGTATGTCTGTCTTCGCTGTTGACAATGGCAAAATTGCATTCCACAGAGAAGCTACCAAAATATCTGCCAATCGAGTAAAATTAAATGAGGGCCCAACTCTGTCAAGAAAATCCTTCATGGCTAAGACAAAGAAAAATCCGAAGAATTGTGAAAGTTGTGCAAGGGTGTTAGCACTGCCAGAAAGTTCTGCAACTGAAGTTTTGATTGATGATCTCGAAAAAGAAAATTCACTAGCTTTGGTACCTCTCCAAAAACTTGACGATTTTCCTGGTTATGCAATTGTGGTTCAGGAATCAAACCAGTCAAAACCAGGTTGGTCACTCCTGCGGCAGGTGTTTCTGCCTAAAAAGCAAATGCAGAAATCATATGTGAAAAATGCATGTGTTTTTCAACGTGCATTAAGCCACACTAGCTGGCATTCTTCAGCTGTTGTCCATCCAGATCATAAACAGATTAATATTGATGAGAATGACAATACTACCCTTGATGGGGAGAGTGGTGCCATTGTTCCATTTGGATCTGCAGCTAATTTTCCTCCTCCCTCCCTTTGCGGTGGCTTGAGTGACCTTCCTAAAGAATTGTTTAGCTTACAAGAGAAGTACTCATCTTCATGCAGAGAATATAGTTTCCAGGAACTTGTATCTGCAACAGCTAACTTCTCGCTGGAAAATTTGGTTGGCCAAGGTGGTAGTAGTCATGTTTACAAAGGATGTCTTCCAGATGGCAAGGAATTGGCAGTGAAAATTTTGAAACCATCAGAAGATGTGCTAAAAGAGTTTGTTTTGGAAATTGAGATCATTACGACTTTGCATCATAAAAACATAATATCTCTATCTGGGTTTTGTTTTGAGGGCAACAATTTACTGTTGGTTTATGATTTTTTATCAAGAGGAAGCCTAGAAGAGAACCTTCATGGTAATAAGAAGGACTGTAAGGCTTTTGGTTGGCAAGAGAGGTATAGGGTGGCTGTGGGTATTGCTGAGGCATTGGACTATCTTCATAATGGCTGTGCACAGACTGTGATTCATAAGGATGTAAAATCTTCGAACATCCTTCTTTCAGATGATTTTGAGCCTCAGCTGTCAGATTTCGGACTGGCGAGTTGGGGTTCTTCTTCATCCCACGTTACTTGTACTGATGTAGCTGGAACCTTTGGGTACCTGGCTCCGGAATACTTTATGCATGGCAGGGTAACTAACAAAATCGATGTATATGCTTTTGGTGTTGTGCTTCTTGAGCTTCTCTCTAGGAGGAAACCCATCAACAATGAATGCCCGAAGGGCCAGGAGAGCCTTGTGATGTGGGCAACACCAATTCTAAAGGGTGGGAAGCTTTCTCAATTACTTGATTCAAGCGTAGGAGGTGATTACAAACATTGGCAGATTGAAAGAATGGTTTTGGCTGCTACCCTTTGCATTAGACGAGAACCTAGACTTCGACCTCAAATCAGCATCATATTGAAACTTCTGCATGGTGACGACGAAGTGACAAGATGGGCAAAACAAGAAGTTAATGCACCAGAAGAACTTGATGGCTTTGATGGGGAACCAATCAATATTCAGTCCCATCTGAACCTTGCGTTGCTGGATTTGGAGGATGATGCAGTTTCTGTTAGTAGCGCTGACCAGAGTGTCTTATTGGAGGACTATTTGCAAGGAAGATGGAGTCGCTCGTCTAGTTTTGACTAA 2412 0.442 MDPRLKESKCPLNDARPLTPFTGHSMSMFQIKMFMFCDGLPLPSSNRIPFPNSQYKVGKQARREVRGKRLEPEKRRPLPRLSGGAIFQSQSVTRRQMKLTGDSATVDGCTGDCGSGRTVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTITEGTGSLLSLVNTFDSVLAVYEGFCNLKQVDLKLKVCRGASVRKLLVQEAKLFGAATVIVGTSKTHHTIRSSSSVAKYCAKKLPRCMSVFAVDNGKIAFHREATKISANRVKLNEGPTLSRKSFMAKTKKNPKNCESCARVLALPESSATEVLIDDLEKENSLALVPLQKLDDFPGYAIVVQESNQSKPGWSLLRQVFLPKKQMQKSYVKNACVFQRALSHTSWHSSAVVHPDHKQINIDENDNTTLDGESGAIVPFGSAANFPPPSLCGGLSDLPKELFSLQEKYSSSCREYSFQELVSATANFSLENLVGQGGSSHVYKGCLPDGKELAVKILKPSEDVLKEFVLEIEIITTLHHKNIISLSGFCFEGNNLLLVYDFLSRGSLEENLHGNKKDCKAFGWQERYRVAVGIAEALDYLHNGCAQTVIHKDVKSSNILLSDDFEPQLSDFGLASWGSSSSHVTCTDVAGTFGYLAPEYFMHGRVTNKIDVYAFGVVLLELLSRRKPINNECPKGQESLVMWATPILKGGKLSQLLDSSVGGDYKHWQIERMVLAATLCIRREPRLRPQISIILKLLHGDDEVTRWAKQEVNAPEELDGFDGEPINIQSHLNLALLDLEDDAVSVSSADQSVLLEDYLQGRWSRSSSFD 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0379 803 ProSiteProfiles Protein kinase domain profile. 461 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0379 803 ProSitePatterns Protein kinases ATP-binding region signature. 467 489 IPR017441 GO:0005524
Glsi02g0379 803 PANTHER OS08G0249100 PROTEIN 169 745 IPR046958 -
Glsi02g0379 803 Pfam Protein kinase domain 463 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0379 803 Gene3D HUPs 116 249 IPR014729 -
Glsi02g0379 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Glsi02g0379 803 SMART serkin_6 461 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0379 803 SUPERFAMILY Protein kinase-like (PK-like) 441 731 IPR011009 -
Glsi02g0379 803 Gene3D Transferase(Phosphotransferase) domain 1 536 748 - -
Glsi02g0379 803 CDD USP_Like 118 243 - -
Glsi02g0379 803 Gene3D Phosphorylase Kinase; domain 1 431 535 - -
Glsi02g0379 803 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 430 535 - -
Glsi02g0379 803 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 116 249 - -
Glsi02g0379 803 FunFam Putative receptor-like serine/threonine-protein kinase 536 747 - -
Glsi02g0379 803 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 117 242 - -
Glsi02g0379 803 Pfam Universal stress protein family 117 240 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0379 Glsi-ChrGlsi02 2420039 2424174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0379 449 724 Trihelix Transcription Factor Family AT1G68690 44.681 1.16e-71 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi02g0379 Pkinase 2.7e-41 CL0016