Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0378 ATGGCGGAGAAAAGTGGCAAGAAACCATTGAGCCTCAATGACAGTCATTATCGATTCCTTCAAGACCTTTCTGCTCCTCCTAAGCCCTCCTCAAAGCCATCGGATGATGAAGATAAGTCATCCACGATGATGCTTGAAGGCCGAAGGCGACAGAACAAAGCTTTATCCAAGGGCAGCAATAGGAAAGATGATGATAATATCCCCCAATTTTCTGCAATCACCGACTTTGACTCTCCTATCGAGCAACACTCCGCGGAAGATGAAAAGCCGATCAAGGTAGAGGGCCGACGCCGTCTCTGTAAAATTTCACCGAAGGAAAGTGGTAAAGATCACAGTGATAATATTCCTCAGTCTAAAGAGCTGACCGATTTTACCGCCCGCCAGGGGGAAAAGAAGACGAAGGTTAAAATGGAAGGGCGCCGTCGCCTCTGCAAAGTGTCATATTCAGAAGATGATAATGTTGATAAAACGCTTGATGAATCGGAACTTTCTGACCTTGTAGATTTTGATTCACCCCCTTTGCCACCAAAAAATGTAATTAAGATTGATGAGACTGGGGGTAGGAACGAAATCAGGGATATTTTAAATGAGTTGAGCTCAAAATTTGAGATTCTGTCAATTGAGAGAAACAGAGTACCAAAATCAGTGGAGACGGTTGAAGATTCTTCAGCTTTAGTTAGAGGAAAAGAAACTGGGGAAGATAACCCTGTTGATTATGCGAGTGCAGAATCCTCATTTTCACCGCAACAGGGCCCCTATGACGGCTCATCTGATGCAACGAAGAGCGGTGGTCGTGGTATTGAATACGTAGAAGATGACTCAGACGATTCTGTTGAATTATTGGATCATTTTGACTCTGAGAATGTCAGTTCTATATCTTTGAGTGGCCCAAATTCTACATACAAGTTGCCAGGTAAAATTGCAAAAATGTTGTACCCACATCAGCGGGATGGTTTGAGGTGGCTCTGGGCTTTGCATTGTCAGGGTAAGGGTGGAATCTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAAATTTGTGGCTTTCTAGCTGGATTATTTCATTCGCGTTTAATTAGAAGGGCTTTGATTGTGGCACCAAAAACCTTACTTCCCCATTGGATCAAAGAATTATCAGCTGTTGGCCTCTCTGAGAAGACAAGAGAATACTTTGGAACGTCTACAAAAGCCCGAGAATATGAACTTCAATACATACTTCAGGATAAAGGCATTCTTCTCACAACTTATGATATTGTCCGGAACAATTCTAAGTCGTTACGGGGTGATTATCTATCTGATGGTGAGGAAAGCGAAGACAGCACCATATGGGATTATATGATACTTGATGAGGGCCATCTTATAAAGAATCCAAGCACTCAGAGAGCTAAAAGTTTGCTTGAGATACCAAGTGCCCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAGTTGTGGGCCTTGTTCAATTTCTGTTGCCCTGAGTTGCTCGGTGATAAGAAATGGTTCAAAGAAAAATTTGAGTCAGCCATACTTCGTGGAAATGACAAAAATGCTTCTGATAGAGACAAGCGTGTTGGTTCTTCTGTTGCAAAGGAGTTAAGAGATTGTATTCAGCCTTACTTTTTAAGACGTCTAAAGAGTGAGGTTTTTAATCAAGATGATCAGAATTCAACTGCAAAACTTTCTCAGAAACGAGAGATCATTGTGTGGCTTCGATTGACCAGTATTCAGCGACGCCTTTATGAAGCATTTCTAAGGAGTGAGATTGTTCTTTCAGCATTTGATGGCTCACCACTAGCAGCACTTACGATTTTGAAGAAAATATGCGATCATCCACTTCTGTTGACCAAGCGAGCAGCTGAAGATGTACTGGAAGTGATGGACTCAATGCTAAAGCCAGAAGAGGTTAATGTTGCAGAAAAATTGGCGATGCACATAGCAGATATTGCTGACACAGACGAATTCAAAGATGAGCTTGATGTATCTTGCAAAATATCCTTCATAATGTCATTGTTGGATAATTTAATCCCAGAAGGGCATCATGTGCTTATCTTCTCTCAAACTCGCAAGATGCTTAATCTTATTCAGGATTCTCTCTTATCTAAAGGTTATAAATATTTACGAATTGACGGAACAACAAAAGCCAATGACAGAATAAGCATCGTTAATGATTTTCAAGAAGGTTTTGTAGCCCCCATATTTCTTTTGACATCTCAAGTTGGTGGCTTAGGGCTGACACTTACAAGAGCAGATCGTGTGATTGTGGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTTGACCGTGCATATCGTATTGGTCAAAAGAAAGATGTTCTTGTGTATAGACTAATGACATGTGGAACTGTTGAGGAAAAGATATACAGAAAGCAGGTATTTAAAGGGGGATTATTTAAATCTGCAACAGAGCATAAAGAACAAATTCGGTATTTCAGCCAGCAGGATCTTAGGGAGCTTTTCAGTCTTCCCAAAGAGGGCTTTGATGTATCTCTTACTCAGCAGCAATTAGATGAGGAGCATGATAGCAAAGATACAGTGGACGACTCTTTTAATGCACACATAGAGTTCCTGAAACGTCAAGGCATAGCTGGAGTTAGTCACCACAGTCTACTCTTCTCCAAAACAGCACCAGTTCAAGTTGCACCTGAGGATGATGAAGTGACAAGTAATCAAGGGACTAAATACGTCGGAACTTCAGCATCTACTTCTTCCCTTGAACATGTTGCTGATGGGGCTGAGTTTGCTTTTAATCCAAAGGAAATCAAATTGTGCAAAAGAAGTTCTTCCCCAAGTAGTGCTGGTAAATTGACAGAGTCAGAAATCAGGGATAAAATCAAACGGCTTTCTCAAACACTCACAAATAAGGCAATGATTTCTAGATTACCTGATGGGGGGGAAAAGCTACAGCAGCGGCTTGCTGAACTCAATGCAGAGCTCACCAAATTGAAGATGGCAGAAAGAACCGAAGTTGATTTGGATGATATAACCGGGGAATTTCAAAGGGTATTGAATGTGTAA 3057 0.4138 MAEKSGKKPLSLNDSHYRFLQDLSAPPKPSSKPSDDEDKSSTMMLEGRRRQNKALSKGSNRKDDDNIPQFSAITDFDSPIEQHSAEDEKPIKVEGRRRLCKISPKESGKDHSDNIPQSKELTDFTARQGEKKTKVKMEGRRRLCKVSYSEDDNVDKTLDESELSDLVDFDSPPLPPKNVIKIDETGGRNEIRDILNELSSKFEILSIERNRVPKSVETVEDSSALVRGKETGEDNPVDYASAESSFSPQQGPYDGSSDATKSGGRGIEYVEDDSDDSVELLDHFDSENVSSISLSGPNSTYKLPGKIAKMLYPHQRDGLRWLWALHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALIVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKAREYELQYILQDKGILLTTYDIVRNNSKSLRGDYLSDGEESEDSTIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKEKFESAILRGNDKNASDRDKRVGSSVAKELRDCIQPYFLRRLKSEVFNQDDQNSTAKLSQKREIIVWLRLTSIQRRLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEVMDSMLKPEEVNVAEKLAMHIADIADTDEFKDELDVSCKISFIMSLLDNLIPEGHHVLIFSQTRKMLNLIQDSLLSKGYKYLRIDGTTKANDRISIVNDFQEGFVAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVFKGGLFKSATEHKEQIRYFSQQDLRELFSLPKEGFDVSLTQQQLDEEHDSKDTVDDSFNAHIEFLKRQGIAGVSHHSLLFSKTAPVQVAPEDDEVTSNQGTKYVGTSASTSSLEHVADGAEFAFNPKEIKLCKRSSSPSSAGKLTESEIRDKIKRLSQTLTNKAMISRLPDGGEKLQQRLAELNAELTKLKMAERTEVDLDDITGEFQRVLNV 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0378 1018 Gene3D - 570 867 IPR027417 -
Glsi02g0378 1018 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 323 498 IPR014001 -
Glsi02g0378 1018 FunFam Protein CHROMATIN REMODELING 24 290 568 - -
Glsi02g0378 1018 MobiDBLite consensus disorder prediction 238 257 - -
Glsi02g0378 1018 Coils Coil 978 998 - -
Glsi02g0378 1018 Gene3D - 290 569 IPR038718 -
Glsi02g0378 1018 MobiDBLite consensus disorder prediction 80 117 - -
Glsi02g0378 1018 Pfam SNF2-related domain 314 618 IPR000330 GO:0005524|GO:0140658
Glsi02g0378 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 844 IPR027417 -
Glsi02g0378 1018 Pfam Helicase conserved C-terminal domain 668 780 IPR001650 -
Glsi02g0378 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 548 IPR027417 -
Glsi02g0378 1018 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 671 830 IPR001650 -
Glsi02g0378 1018 CDD SF2_C_SNF 660 791 - -
Glsi02g0378 1018 PANTHER SNF2/RAD54 FAMILY MEMBER 129 997 - -
Glsi02g0378 1018 SMART ultradead3 306 509 IPR014001 -
Glsi02g0378 1018 MobiDBLite consensus disorder prediction 215 266 - -
Glsi02g0378 1018 MobiDBLite consensus disorder prediction 31 64 - -
Glsi02g0378 1018 SMART helicmild6 697 780 IPR001650 -
Glsi02g0378 1018 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0378 Glsi-ChrGlsi02 2410098 2418985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0378 311 834 RAD5 or RAD16-like Gene Family AT1G02670 24.382 3.76e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi02g0378 SNF2_N 1.4e-48 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0378 02 2410098 2418985 Glsi02g0378 02 2410098 2418985 ECH