Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0374 ATGGAAGATGAAAGTCATAGCAATTTGCCAAATGGTCCCAGCACAGGTAGCCCTGAAAGTCCTTGCTTAAAGACCAGCAGCAACAAAGAACAAGATCGCTTTCTCCCTATAGCCAATGTGGGTAGAATCATGAAGAAAGTGATCCCTGGGAATGGCAAAATCTCAAAGGACGCTAAAGAGACTGTTCAAGAATGTGTATCAGAGTTCATCAGCTTCGTCACTGGGGAAGCCGCCGACAAATGCCAGAGAGAGAAGAGGAAGACAATCAATGGGGATGATATCATATGGGCCATCACAACCTTAGGCTTCGAGGATTATGTGGACCCATTAAAATCCTACCTTCAGAAATACAGAGAGATAGAAGGAGAGAAGCTTAATATTCCTAAGAACCAACGTTCTGAACAAAGGCTACATCAACGCCCACTGCATCACCACCAGCAAGACCAAAATAATAATCTACCCTTAAACACTGTATATTCTTCAACCAATCTCATTTCTCAGCCTCCTTTTGTGGCCACGGATCACCCATTTTCCTTACCATTCTCCCCGACTTCAATTCAGAAACAATTGCACCCGCAAGACCAGATCGATTCAGTGGGGCATTGATTGAAGAAAACAAAACATCAATTTCCCAATCGCATATCAACAACAAGCCTCGCACCTGTTCAATTTGTCATTTGTGAGACAAGACTAGACAAGCGCCGCGCGGGGTCGATCTCTCAATGTCCTTTTCATTTCAAACCTCACGACACCCATGGCATAACACGTGCTAAGCACGATTGCGACGGGGGTGGGTGGGTGCTTCCAGCCGCCGCCGCCGCTATTCATGGTATGCAACTTTTACCAGCCATAATGGAATGTCTCAGCAACACGCTTCAAATAACTCTGAAGTATAATGCAAACTTAAAGAAGAAACATGACAAGGAAAGAACAATTTACAAATACAGCCCGAAAGGAAAAATAGGAAGCGAAACGTGGAAATCCTTATTCCTAGTATATTACATCTTTACATCGGCATTGAAAGCGAAAGAGTACGGATACGAATGCAAATCACTGAAACCCATTCACCCCTTAACCGGACGATCTCATTTGAACAGATCGGCGAACATTTTGCTTTTGATTTTGCCACGGAAAGGGGTGGCGTCTTGGAAGGAACCCGTCGGGCGGCGGACGACCACCGGATCTGATGTCTCGGCGGCGGCGGCGGCACGCCCGGGCGAGATCTCGCTGAACCAATCGGCAAATATTTTTCCTTTGACAGTGCTTCGTGAAGGGGGGACGTTGCTGAAGGTACCAATCGGGTGGAGGACACAGGTGGCACCCATGCTTGCTCGCCGTCGACTTGCTGCCTTGTGTGCAAAATTATGA 1368 0.4678 MEDESHSNLPNGPSTGSPESPCLKTSSNKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEAADKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYREIEGEKLNIPKNQRSEQRLHQRPLHHHQQDQNNNLPLNTVYSSTNLISQPPFVATDHPFSLPFSPTSIQKQLHPQDQIDSVGHXLKKTKHQFPNRISTTSLAPVQFVICETRLDKRRAGSISQCPFHFKPHDTHGITRAKHDCDGGGWVLPAAAAAIHGMQLLPAIMECLSNTLQITLKYNANLKKKHDKERTIYKYSPKGKIGSETWKSLFLVYYIFTSALKAKEYGYECKSLKPIHPLTGRSHLNRSANILLLILPRKGVASWKEPVGRRTTTGSDVSAAAAARPGEISLNQSANIFPLTVLREGGTLLKVPIGWRTQVAPMLARRRLAALCAKL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0374 455 SUPERFAMILY Histone-fold 31 152 IPR009072 GO:0046982
Glsi02g0374 455 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi02g0374 455 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Glsi02g0374 455 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Glsi02g0374 455 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Glsi02g0374 455 MobiDBLite consensus disorder prediction 1 29 - -
Glsi02g0374 455 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Glsi02g0374 455 MobiDBLite consensus disorder prediction 7 29 - -
Glsi02g0374 455 MobiDBLite consensus disorder prediction 125 145 - -
Glsi02g0374 455 MobiDBLite consensus disorder prediction 125 156 - -
Glsi02g0374 455 FunFam Nuclear transcription factor Y subunit B-3 23 150 - -
Glsi02g0374 455 Gene3D Histone, subunit A 21 156 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0374 Glsi-ChrGlsi02 2389456 2394051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0374 12 199 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.356 5.05e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi02g0374 CBFD_NFYB_HMF 3.5e-27 CL0012