Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0362 ATGAACGAAGCTCAAATGACCACTCCCCACATATTCAGATGCCCCATCAGTCTAGACTTGTTCCAAGATCCAGTGACTTTATGCACTGGCCAAACCTATGATAGGTCAAGCATAGAACAATGGCTTGCTGCAGGTAATCTCACTTGCCCTGTCACAATGCAGAAGCTCCATGATTTATCCATTGTTCCCAATCACACTCTTCGTCATCTGATCCAACAGTGGCTTCAATTGGGTCCTCAGTTTGACCCTTCTAACTCTGCAGCCATGGATTCTTTAGCTTCTATCAAACACACCCTTCAATCTCAGGAACCCAATTTAGAGAACAAGCTCAAAGCACTTGAGAAAATCTTAGTCTTACCTGATGAATATTGTTTTTTCATGAAATCTTTTTTCCTCCAACTGGGTTTCTTACCTCTGCTTTTGGAATTAGTTTTTGCAAGATCAATAGATCACATGGGGTTTGTAGAGCTAGCACTTTCTTGTATTCTAAAATTGCTGCCTCTTGGCAGTTTGGAGTCTTGCAATATGCTCAAGGAAGAATCTAAATTAGCAACGTTCCTACTATTATTTGAAAAGGGAAGTACCAAGATAAAAACTAGTTTGTGTCATCTTATAGATTCAGCAGCAACATCATCACAGACAGAAGAGGCATGTTTCATGTTTGGAAGCTCTCACAAACTAGTGCAAGAAATCGTTCTTCTTCTTGGCCAAAACTGCGAGGCTTCTGAGGCTGCAATTAAAGCTATATCAGCAATATGTTGCTCTGAATCTAACATGCAGAATTTGGTAAGAGCAGGAGCAATAGATGGGATCATAATGTACATTTCAGGTTATGAAAGAAGAGAAAAGAAGTTGGGTCCATTGGCAATGTTAATAATGGAGAAACTTTTGATACTGGAGAGTGGTAAAAAGACATTAATTAATAACCCAAATAGTATAAAAGCTTTGGTGAAGATAGTTTTCAGTTTCAGGGTATGTAATGAAGAGTGCAGTGAGGGAGCCGTTGGGTTGCTTTTGATGATTTGTGGTGAATTTGAGGGGGCGAGAGAGGAAGCCATTAGTGCTGGAGTTGTGACTCAGCTGCTATTGCTTCTGCAAAGCCAAAGTAATGCCACGACAAAAACTAAGGCAAGAATGCTGCTCAAGTTGCTAACATCCAAGTGGGCTGAGAAACCAAAGCAGGTGTAG 1188 0.4057 MNEAQMTTPHIFRCPISLDLFQDPVTLCTGQTYDRSSIEQWLAAGNLTCPVTMQKLHDLSIVPNHTLRHLIQQWLQLGPQFDPSNSAAMDSLASIKHTLQSQEPNLENKLKALEKILVLPDEYCFFMKSFFLQLGFLPLLLELVFARSIDHMGFVELALSCILKLLPLGSLESCNMLKEESKLATFLLLFEKGSTKIKTSLCHLIDSAATSSQTEEACFMFGSSHKLVQEIVLLLGQNCEASEAAIKAISAICCSESNMQNLVRAGAIDGIIMYISGYERREKKLGPLAMLIMEKLLILESGKKTLINNPNSIKALVKIVFSFRVCNEECSEGAVGLLLMICGEFEGAREEAISAGVVTQLLLLLQSQSNATTKTKARMLLKLLTSKWAEKPKQV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0362 395 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Glsi02g0362 395 SUPERFAMILY RING/U-box 3 76 - -
Glsi02g0362 395 SUPERFAMILY ARM repeat 106 385 IPR016024 -
Glsi02g0362 395 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Glsi02g0362 395 Coils Coil 96 116 - -
Glsi02g0362 395 Pfam U-box domain 9 76 IPR003613 GO:0004842|GO:0016567
Glsi02g0362 395 CDD RING-Ubox_PUB 9 56 IPR045210 -
Glsi02g0362 395 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Glsi02g0362 395 PANTHER WDSAM1 PROTEIN 5 392 IPR045185 GO:0061630
Glsi02g0362 395 Gene3D - 209 394 IPR011989 -
Glsi02g0362 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 78 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0362 Glsi-ChrGlsi02 2322003 2323190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0362 9 390 U-box Gene Family AT1G49780 30.250 1.64e-40 147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0362 02 2322003 2323190 Glsi02g0362 02 2322003 2323190 ECH