Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0348 ATGGCCAAAACAAAATTGATTCCTGGATTTCGGTTTCATCCGACTGATGTTGAGCTGGTTAAGTACTTTCTGAAGAGGAAGGTTATGGGAAAGAAATTCTTGGTTGATGTGATTGCCGAAGTCGACATATACAAGTACGCTCCATGGGATCTCCCTGATAAATCTTGTTTGAGAACTGGGGATTTGGAATGGTACTTCTTTTGCCCTAGAGGAAAGAAATATGCCAGTGGGGCCAGAATGAATCGTGCAACAGAAGTTGGGTACTGGAAAACTACTGGGAGGGATAGACCTGTTCATTACAAGAATCAAATTGTGGGGATGATAAAAACCCTGATATTTCATGGAGGTAGAGCGCCTCAAGGAGACCGAACTGATTGGGTTATGCATGAATTTAGACTCGAAGATAAGGATCTGACTGACAAAGGCATTTGGCAGGACTCCTATGTGCTCTGTAAGATCTTCCAAAAGGATGGTCCTGGTCCTAGAAATGGTGCTCAATATGGAAAACCATTCAATGAAGAAGACTGGGATAATGATGAGGAAATTGATGGTGCAGATTACATCCCTTTAGCTGCTCTGTCTGCACCAGACCCCATTCTGCCTGTTACACATAATAGTTCTGTTGCAACTGAGATGTATCTCCCTGCAAGTGGATGCATTGGGTCATCATCTGTTTCATGTCTTCCAGGAGCGATGCCTTCTTCTTCTTCTCTGGTGCATCCTTCAATTCCAAATGATCAAGTTATTCACAATGACGTTTCACAAGTTCCAGTTGATGATGATATTTCTTTTATGTTGGATTGTTTCACTGAAGATAACACATTGTCTTTGAATGAAAACAAAGTTGAGAAGATTGATAATCGTGGTCAGGAAAATGATGCTGAAGGCACACCTTGTTTGGATGTTAATGATATTTATAAGGACTTGGGAGACCTTGGCAACTTGACTGGATGGAGAGATGGACATGATTTTTCCTGTGGCCAGAAATCTGAATACAATGCAAACCAAATACTTACTACGGGTAGTTTGTCCTTTGGGTTCAGTGACCCAGACTTTTTGGAGTTGCTTGATCTAGAGCCTCCGTTGTTCCATCAGACTGAACAACATTGA 1110 0.4171 MAKTKLIPGFRFHPTDVELVKYFLKRKVMGKKFLVDVIAEVDIYKYAPWDLPDKSCLRTGDLEWYFFCPRGKKYASGARMNRATEVGYWKTTGRDRPVHYKNQIVGMIKTLIFHGGRAPQGDRTDWVMHEFRLEDKDLTDKGIWQDSYVLCKIFQKDGPGPRNGAQYGKPFNEEDWDNDEEIDGADYIPLAALSAPDPILPVTHNSSVATEMYLPASGCIGSSSVSCLPGAMPSSSSLVHPSIPNDQVIHNDVSQVPVDDDISFMLDCFTEDNTLSLNENKVEKIDNRGQENDAEGTPCLDVNDIYKDLGDLGNLTGWRDGHDFSCGQKSEYNANQILTTGSLSFGFSDPDFLELLDLEPPLFHQTEQH 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0348 369 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Glsi02g0348 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 234 - -
Glsi02g0348 369 FunFam Nac domain-containing protein 86 15 159 - -
Glsi02g0348 369 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Glsi02g0348 369 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Glsi02g0348 369 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0348 Glsi-ChrGlsi02 2244771 2247145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0348 1 273 NAC Transcription Factor Family AT5G64060 53.901 1.14e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi02g0348 NAM 1.5e-33 No_clan