Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0341 ATGGATGCCAACCAGATTAATACTGCATTCACAAATGTTAACAGCTATTGGAATCTTGAGAAGATGGAGACAGAAGAAGCTATTCTCCATGACCAATTCCCTATGGGTTCTGTTTGGCCAAGCTACCCTCTTCAAATACAACCCTCATCCTCATCCAGCGTAGTACCCACTTCTTCAGATTTCCTGAATGACATGTTAGGCATCCAGCTTGAAGAGGATGAAGAACCAGAAGAAGAGCTAGGGGCCATGAAGGAGATGATGTACAAGATCGCAGCTATGCAGCCTGTGGACATCGACCCAGCCACCATCCGAAAGCCAAAGAGGAGAAACGTGCGAATCAGCGACGACCCACAAAGCATCGCTGCAAGACACAGGCGAGAGAGGATCAGTGAGAAAATCCGAATCCTCCAAAGACTCGTCCCCGGGGGGACCAAGTTGGACACTGCCTCCATGCTCGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCAGGCTGCTTCAATCAACTCAACAATGCGTCGATACCACTACTAGTTGCAGCTTAGCCCCCGGCGGTGATTGGCCTTTTGCACCACCAAATATACTACACAGTTCCACCGCCTCCTCATCGTCCATGGACACGGTGGTCAGAATGGGGTTCAACGCCGCTGAGAATCATGGCTCCGGTGGGTTTAACCATGAGATACCCGAGGTGAACTCCCCTGATTTCTTACGCTGGATTAACGATGCGGTTTCTGCTAATTTAGGAAGGGTATTACTTGCGATGGTAGTTCCTATTAATGGCTTTGGACTTCATCAGTTCCTCTGCAAAGGGAGATTGCGGTGGATGATTGAGACAATGAGTGCTTTAAACCGTAGCGTTTCATTCAACAGGACTACATCGTTCAATCGAAGAGCACTCAACACTGGAAGTCCTAAAATTAACCTATTCGGACGGGTCTCGCGGGGATTTCACTTTCACGTGCTTGTGATTATTGGGTCTGTGATTTCATTCTTCATAGCAATTGGTGGCGGATATATATATGTGCTTCCTACCCTTAGCCAGGCATTTTTTCACGGGCAGGGTTTTTCCAACTATAATAGATCATTAAGAAACTGTGATGTTTACCAAGGAAGCTGGGTTCGGTTCCCGGCTTACCCGTTGTACAATGCGACTGAGTGTCCTTTTGTAGAACAAGGATTCAATTGCTTAGCTAATGGGCGGAATGACAAGAATTATCTTAATTGGAGGTGGAAACCTAAGCATTGTGATATTCCGAGGTTTAATGTGCGTGATGTTTTGGAAATGTTCAGAAGCAAAAGAATTGTTTTTGTTGGTGATTCTATGAGCAGGACTCAGTGGGAATCACTGATTTGTATGCTGATGGGTGGGTTAGAGGATAAACAGAGCGTTTATGAAGTAAATCATAATAAGATATCGAAGCGTATTAGATTCTTAGGGGTTCGGTTCAGTGACTTCAATTTTACCATTGAATACTTTCGCTCCGTTTTCCTGGTACAACATGGTCCGATGCCTAAACATGCTCCCAAGAGGGTCAAATCAACTCTGAGATTGGACAGGTTAGACGAGATGAGTGACCAGTGGGTTGATTCAGATGTTCTTATATTCAATACTGGGCATTGGTGGGTGCCATCTAAGCTTTTTGACATGGGTTGCTATTTCCAGGTTGGAAGCTCCCTTAAACTTGGGATGTCTCTTCATGTTGCCTTCGGAACAGCTCTTGGCACTTGGGCATCATGGGTTGAGAGAAAAATTAACCAAAATAGAACACGCGTCTTCTTTAGGACTTATGAGCCATCTCACTGGAGTGATCTACCCCGCAGGACTTGTAACATGACCCACTACCCCATGCTAGAAACTGATGGAAGGGATCAAAGCTTGTTTTCAGACACAGTTTTGGAAGTGGTAAAGAATGTTACAATTCCTGTAAATGTTCTCCATGTTACATCTATGACAGCTTTCCGGAGTGATGCACACGTTGGTAACTGGAGTGACAATCCATCTGTCCATGATTGTAGCCACTGGTGTCTGCCTGGAGTACCTGATATGTGGAATGAAATTATGCTCTTCCAACTATTTAGTGATTATGAAATTCCTTTCCAGCAAACGAAATCACAGAATTAG 2133 0.4487 MDANQINTAFTNVNSYWNLEKMETEEAILHDQFPMGSVWPSYPLQIQPSSSSSVVPTSSDFLNDMLGIQLEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSIAARHRRERISEKIRILQRLVPGGTKLDTASMLDEAIRYVKFLKRQIRLLQSTQQCVDTTTSCSLAPGGDWPFAPPNILHSSTASSSSMDTVVRMGFNAAENHGSGGFNHEIPEVNSPDFLRWINDAVSANLGRVLLAMVVPINGFGLHQFLCKGRLRWMIETMSALNRSVSFNRTTSFNRRALNTGSPKINLFGRVSRGFHFHVLVIIGSVISFFIAIGGGYIYVLPTLSQAFFHGQGFSNYNRSLRNCDVYQGSWVRFPAYPLYNATECPFVEQGFNCLANGRNDKNYLNWRWKPKHCDIPRFNVRDVLEMFRSKRIVFVGDSMSRTQWESLICMLMGGLEDKQSVYEVNHNKISKRIRFLGVRFSDFNFTIEYFRSVFLVQHGPMPKHAPKRVKSTLRLDRLDEMSDQWVDSDVLIFNTGHWWVPSKLFDMGCYFQVGSSLKLGMSLHVAFGTALGTWASWVERKINQNRTRVFFRTYEPSHWSDLPRRTCNMTHYPMLETDGRDQSLFSDTVLEVVKNVTIPVNVLHVTSMTAFRSDAHVGNWSDNPSVHDCSHWCLPGVPDMWNEIMLFQLFSDYEIPFQQTKSQN 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0341 710 SMART finulus 119 168 IPR011598 GO:0046983
Glsi02g0341 710 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 421 692 IPR026057 GO:0016740
Glsi02g0341 710 CDD bHLH_AtIND_like 114 171 - -
Glsi02g0341 710 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 333 692 IPR029962 GO:0016413
Glsi02g0341 710 FunFam BHLH transcription factor 116 180 - -
Glsi02g0341 710 Pfam PMR5 N terminal Domain 368 420 IPR025846 -
Glsi02g0341 710 Pfam Helix-loop-helix DNA-binding domain 121 162 IPR011598 GO:0046983
Glsi02g0341 710 Gene3D - 116 181 IPR036638 GO:0046983
Glsi02g0341 710 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
Glsi02g0341 710 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 174 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0341 Glsi-ChrGlsi02 2184609 2192627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0341 82 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 78.495 5.82e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g0341 PC-Esterase 9.7e-81 CL0264