Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0340 ATGAGTGGAAGCAGCAGAAACCGCTATTCACAGTGGGGGTTGAGAGACGAGCCTGAATTTGCACCTGATAGTAAGCAATTGTGGTCTGGATTGACCTCTGCAGATGTTGCTCGTGGCAATGCTTCAAAGTGGTCTTATTTGGACCTACTTGGGGATTTTCATCAAAGGAATCTTTTGCTGGAGACAGAGGTTCAAGTCAGTCAGGTTTGTTTCTCTACTCAGCATGTCTTTGCTGACCCCATTTTCCAACAATTGATGGAAGCTTTAGAAGTTTGGCAGGTTTTGGTTTGTTATGGGAGAAGGAGTAGGAGCAGAAGCAGGAGCCCTGCTCACAGTTTCAGGTGGGACTCAGGAGTCAATGACAGATATAGAATGAAATTGACACAATCATGTAGGGCTTTTAGAGCTAGGAAATGCAGAAGAGGCAATAATTGCCATTTCCTTCACCATGATAACGAAAATTATGAGGATAGTGGGGAAAAAAGACATAAGAAAGATGGAGCTCCCAGATATTCTGCTCCCCATAAGAATAGGGACTATTCTCTTAGAAGTGGAAAATCTAATGAGATTTGTATTAATTTTAAAAGAGGAAGGTGTAGAATGGGGCCATCTTGCAAGTATGTGCATCATGGCAATTGTGATGGGTTTAGTAAAGGCCCTGTAGATGAATCCACTAGAGAAAGGGAAACTGATAGAAGGGTCAGAGAGAATTCTTTTGAGCAGGCTGGTGGGCATGAGCCAAACCTCAGTGGTGATACTTCCTGCAGATTTTTGGCAGCCAGAAAATGTCGTAATGGTAAATATTGCAGGTTATCTCATGATAGACCAGCATTTAGGAGCCCTCAGAGAAGATTAAGGAATGATAGGTGGGGGAGCAATCCAGGTGGAGATCAGTTGTTAAATAGATTAAAATGGAGTGTTTCAGTTAGTCCTAGTGGAAGGTTAGGAGATGATAGATGGGGTTTGGATGAGAATATGGTTGATGCAAATAAAATGAGGAATGGTCCAAAGTGGAATGATACAGCTGCTATCTCTAATTCAGCAAAATTGGATGAGGGCACATATGGAAAGATTGATGCCCCAAAATCGGGATTCACTGCTTGGCCTTTGATTAGTGGATGGGGCCATAGTTTAGATAAGAACCAAGTGCTGGGTGAATCACCAGTCTTAAGATATGAGAAAGAAGCCAACCAGTGGAAGCCAGAAAATGCTGGTGCCATCATGGGTGTTTCCCAGTCAATAGGCTCAGGCAAATGGCTTTATGATGCAGAAATGTCTCCTGATTGGAATTATAGGTTTGGATCTTCTGGCCATAGTAAAGAAGATCATGGACAAAATAAGCATGGGTTAAACCAAGACAGCACATATTTAGCCGTATCTGAATGTGACAGAAAACTAGTTGCTCCAGGACAAGACTTCAATCAGAATGCACAGAACGTAGATGCTTTGCATCCTTCAAGCTGTCTCATGGTTGGATTAAGTCAAGAGGCTGTCCCCATCGTGCCTCTAAGAGGAGGAAATGTTGTAGAAATCCTCCCACCCATAACATGGCGGGCAACCCCAGAACTTTATGCTACTTTAAATTCTCATCATACAAAGCATACTCCCCCCCTAGCCAAAACTGAAGGGTTTGGTGAGCCTGTTTCTACCACATTCATCAAGCCAGATTCTACTGTTGGATTCCAGAAGCAGTACTATTCAATGTGTGATAGTATTGCGCCAAAGAAGGCTGAAGCTTGTGGGGTCCCCCCAGGTTTCGCTCCATGTAAAAGAATTGCAGAACATGAGACAGGTATTCCATCATTGTTGTCTAACTCAGGGAGAATAAAATGTGGCGATTCTTGTAAGATTGCCATTTTAGAAAAACAAGATGTTGTCATGAGTGACAATATTGTGGTTGTTAAGCAAAACAATCAAGTGGTAGGAGAGGAAAGGTCAGATACTCAAGATCATAGAAATACAGAAGAGAATGGTCCTCTGGGCAACCTGGACCAAAATGGTGTACCTGAGGAGGCCAGGAAAACAAAGGATGTGAAGGGGATTTGTTCATTCAAAGTTTCCTTGGTTGAGTTCGTTAAGGAGCTTCTGAAACCTGGATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAAGTGGTTGACAAAGTAACTGGTACTCTGCAAAGGGCTCATATTCCTCAAACGCAAGAGAAGATTGACCACTATTCATCATTTTCCAAAGAGAAGCTTCACAAACTTGTACAGGCATATGTGGCAAAGGTTCAGAAGGCATAG 2289 0.4242 MSGSSRNRYSQWGLRDEPEFAPDSKQLWSGLTSADVARGNASKWSYLDLLGDFHQRNLLLETEVQVSQVCFSTQHVFADPIFQQLMEALEVWQVLVCYGRRSRSRSRSPAHSFRWDSGVNDRYRMKLTQSCRAFRARKCRRGNNCHFLHHDNENYEDSGEKRHKKDGAPRYSAPHKNRDYSLRSGKSNEICINFKRGRCRMGPSCKYVHHGNCDGFSKGPVDESTRERETDRRVRENSFEQAGGHEPNLSGDTSCRFLAARKCRNGKYCRLSHDRPAFRSPQRRLRNDRWGSNPGGDQLLNRLKWSVSVSPSGRLGDDRWGLDENMVDANKMRNGPKWNDTAAISNSAKLDEGTYGKIDAPKSGFTAWPLISGWGHSLDKNQVLGESPVLRYEKEANQWKPENAGAIMGVSQSIGSGKWLYDAEMSPDWNYRFGSSGHSKEDHGQNKHGLNQDSTYLAVSECDRKLVAPGQDFNQNAQNVDALHPSSCLMVGLSQEAVPIVPLRGGNVVEILPPITWRATPELYATLNSHHTKHTPPLAKTEGFGEPVSTTFIKPDSTVGFQKQYYSMCDSIAPKKAEACGVPPGFAPCKRIAEHETGIPSLLSNSGRIKCGDSCKIAILEKQDVVMSDNIVVVKQNNQVVGEERSDTQDHRNTEENGPLGNLDQNGVPEEARKTKDVKGICSFKVSLVEFVKELLKPGWKEGQITKEDYKTIVKKVVDKVTGTLQRAHIPQTQEKIDHYSSFSKEKLHKLVQAYVAKVQKA 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0340 762 ProSiteProfiles Zinc finger C3H1-type profile. 125 152 IPR000571 GO:0046872
Glsi02g0340 762 MobiDBLite consensus disorder prediction 220 240 - -
Glsi02g0340 762 ProSiteProfiles Zinc finger C3H1-type profile. 185 212 IPR000571 GO:0046872
Glsi02g0340 762 Coils Coil 761 762 - -
Glsi02g0340 762 ProSiteProfiles Zinc finger C3H1-type profile. 249 276 IPR000571 GO:0046872
Glsi02g0340 762 SMART c3hfinal6 125 151 IPR000571 GO:0046872
Glsi02g0340 762 SMART c3hfinal6 186 211 IPR000571 GO:0046872
Glsi02g0340 762 SMART c3hfinal6 249 275 IPR000571 GO:0046872
Glsi02g0340 762 Gene3D - 123 213 - -
Glsi02g0340 762 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 520 761 - -
Glsi02g0340 762 MobiDBLite consensus disorder prediction 218 247 - -
Glsi02g0340 762 MobiDBLite consensus disorder prediction 638 672 - -
Glsi02g0340 762 MobiDBLite consensus disorder prediction 150 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0340 Glsi-ChrGlsi02 2173677 2177223 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi02g0340 None None None