Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0339 ATGACCGCTCATCCCAGGAAACCGCCCTCTAAACGCATCACCGTTTTCCTCTTCTCTCTTTCAAGATCTGCCTTCCTCCTCTTTTCCATGGCTTCTCTTCTCTCCCTTTCCCTTGTTTCTTTCTTTCTCTTTCTCTCTCTTTCCTCCGCCGCTCGCAACCGGCATTCCCCGTCTCTTTCGCCCTCCCCCACGATCCAACAGGCCTGCAAGGCCACCCGCTTCCCTCAACAATGTCAAACTTCTCTAACCCACCTCCCTCCCGACCCGGCTCCGCTTCAAATCATCCAATCCGCCATCGGGGTCTCCTCCGACAACCTCAAGACGGCCCAATCAATGGCCAAGTCCATCCTGGACTCCTCAGCAAGCAGTCGCAACCGCACTACCGCTGCAAACATTTGCCTCGAGGTGCTCCATAACTCAGAATACCGCATTTCCCTTGCCAATGACGCGCTTCCGCGTGCTAAGACCAAGGACGCCCGTGCATGGATGAGTGCGGCGTTGGTTTACCAGTACGACTGCTGGTCCGCTTTCAAGTACGCCAACGACACCCGCATGGTAGGCGAAACGATGGCCTTCTTGGACTCCCTCATCGGGCTTTCCAGTAACGCGCTCAGCATGATGGTGTCATACGATTTATTCAGGAACGACACTGCCTCGTGGAGGCCACCCATGACCGAGCGTGATGGGTTCTGGGAGGCATCTGGTTCAGGCGGTGGGTCTGGATCGGGCTTCAGCGGCGGGGTCCCGACGAAATTGAAGCCGGACGTTACAGTTTGTAAGCAAGGGGGCAATGGCTGTTACAAGACGGTGCAGGAAGCAGTTAACGCTGCCCCGGATAACGCGGGCGCGCGGAGGTTTGTGATATACATAAAGGAAGGTGTTTATGAGGAGACGGTCAGGGTTCCGTTAGAGAAGAAGAATTTGGTATTTTTAGGGGACGGCATGGGTAAGACGGTTATCTCAGGGTCCTCTTATGCGGATCAGCCGGGAGTGACAACCTACACCTCAGCTACGGTTGGTGTTATGGGTGATGGATTCATGGCCAAGGATCTAACAATCCAGAACACAGCAGGTCCTGATGCTCACCAAGCAGTGGCCTTCAGATCAGACAGCGATCTCTCTGTCATTGAGAACTGCGAATTCATAGGCAATCAAGATACTCTTTATGCTCACTCCCTGCGCCAATTTTACAAATCATGTCGCATCCTGGGCAATGTGGACTTCATCTTTGGAAATTCCGCTTCCATTTTCCAAGACTGTCAAATCTTAGTCCGTCCCAGGCAAGTTGGACCAGACAAGGGCGAGAACAATGCCGTCACAGCACATGGCAGGATAGACCCTGCGCAGTCAACAGGCTTTGTTTTTCAGAATTGCTTGCTCAATGGCACTCAGGAATATATGGCATTGTATTATAGCAAGCCTCAAAAACACAAGAACTTCTTGGGGAGGCCATGGAAGGAGTACTCTAGAACAGTTTTCATTCATTCTTTCCTGGAAGCTCTCATAGCACCAACGGGTTGGATGCCATGGAGTGGCGATTTTGCGCTAAAGACGCTTTACTATGGAGAATTTGAGAATTCAGGACCTGGTTCCAATTTAGCTCAGAGAGTACCCTGGAGTAGCAAGGTCCCAGCTGAGCATGTCTTCACATATTCAGTGCAGAATTTCATTCAAGGAGATGAGTGGATTCCACAATCACGTAATTAA 1707 0.5149 MTAHPRKPPSKRITVFLFSLSRSAFLLFSMASLLSLSLVSFFLFLSLSSAARNRHSPSLSPSPTIQQACKATRFPQQCQTSLTHLPPDPAPLQIIQSAIGVSSDNLKTAQSMAKSILDSSASSRNRTTAANICLEVLHNSEYRISLANDALPRAKTKDARAWMSAALVYQYDCWSAFKYANDTRMVGETMAFLDSLIGLSSNALSMMVSYDLFRNDTASWRPPMTERDGFWEASGSGGGSGSGFSGGVPTKLKPDVTVCKQGGNGCYKTVQEAVNAAPDNAGARRFVIYIKEGVYEETVRVPLEKKNLVFLGDGMGKTVISGSSYADQPGVTTYTSATVGVMGDGFMAKDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRILGNVDFIFGNSASIFQDCQILVRPRQVGPDKGENNAVTAHGRIDPAQSTGFVFQNCLLNGTQEYMALYYSKPQKHKNFLGRPWKEYSRTVFIHSFLEALIAPTGWMPWSGDFALKTLYYGEFENSGPGSNLAQRVPWSSKVPAEHVFTYSVQNFIQGDEWIPQSRN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0339 568 NCBIfam pectinesterase inhibitor domain 34 206 IPR006501 GO:0004857
Glsi02g0339 568 FunFam Probable pectinesterase/pectinesterase inhibitor 51 63 209 - -
Glsi02g0339 568 PANTHER PECTINESTERASE 39 564 - -
Glsi02g0339 568 Pfam Pectinesterase 255 560 IPR000070 GO:0030599|GO:0042545
Glsi02g0339 568 SUPERFAMILY Pectin lyase-like 253 565 IPR011050 -
Glsi02g0339 568 FunFam Pectinesterase 249 568 - -
Glsi02g0339 568 SMART PMEI_2 60 206 IPR006501 GO:0004857
Glsi02g0339 568 CDD PMEI-like_3 68 207 - -
Glsi02g0339 568 Pfam Plant invertase/pectin methylesterase inhibitor 64 206 IPR006501 GO:0004857
Glsi02g0339 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 206 IPR035513 -
Glsi02g0339 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 209 IPR035513 -
Glsi02g0339 568 Gene3D - 249 567 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0339 Glsi-ChrGlsi02 2164410 2166954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0339 56 566 Carbohydrate Esterase AT5G09760 68.605 0.0 736