Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0336 ATGGCTCCTGCCACCTCATCGGCGGCTGCCCAGAGGCTTATCGGCTTCAGCCGCCGCACACAAGCTCCCCGCCAGCAGTCGCCGCCGGCATCTCCTCCGGTGAAGAAGTATAAGTCTTTGAACGAGATAATGGCAAAAGCCCGCTATGCTGTCATTGAGCGGGACGATTACAGCGACGTGACCTGTGCCCAATGCGGCACTGGTGAACGACCAGACGAGCTGCTCCTATGTGACATATGCGATAAAGGCTTCCATATGAAATGCGTGAGACCCATTGTTGTCAGAGTCCCAATTGGATCATGGCTTTGCCCTAAGTGTTCGGGAGAGAAGAGAGTAAGATGTTTCTCTCAGAAGAAGATAATTGATTTTTTCCGGATTCAGAAGTGTACTGATCTTAATGACAAATGCTCTTCTCCACAAGATGCTAAGAAGCGTAAGCGACGTTCAGGATCATTGGTATTGCAAAAGAAACGAAGGAGATTATTGCCATTTATTCCAACAGAAAATCCTTCCCAGAGAATGAAACAGATGGGTTCCCTTGCATCCGCTTTATCAGCATTGCATATGGAATTCAGTGATGATCTCACATACTTTCCTTGGATGGCTCCTAGGTCTGCTAATCATGCCGAGTTTGAAGATGGTGGCATGCAGGTTCTTTCCAGGGAAGATACTGAGACCTTGGAACACTGCAGAGCTATGTGTAGAAGAGGCGAATGCCCACCCCTTATGGTTGTTTTTGATTCATTAGAGGCAGATGGCCCAATCAAGGATATGACATTCATTACTGAATACACAGGTGATGTGGATTACATTAAGAACCGAGAACATGATGATTGTGACAGTATGATGACCCTTCTTCTAGCAATCGATTCTTCTAAAAGTCTTGTCATCTGCCCTGATAAACGTGGAAACATTGCTCGCTTTATCAATGGCATCAACAATCATACTCTGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAGTGTGAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCTAAGGGGGAGAGGCTTTATTATGATTATAACGGCTATGAGCATGAATACCCTACTCATCATTTTGTCTGA 1110 0.4532 MAPATSSAAAQRLIGFSRRTQAPRQQSPPASPPVKKYKSLNEIMAKARYAVIERDDYSDVTCAQCGTGERPDELLLCDICDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVRCFSQKKIIDFFRIQKCTDLNDKCSSPQDAKKRKRRSGSLVLQKKRRRLLPFIPTENPSQRMKQMGSLASALSALHMEFSDDLTYFPWMAPRSANHAEFEDGGMQVLSREDTETLEHCRAMCRRGECPPLMVVFDSLEADGPIKDMTFITEYTGDVDYIKNREHDDCDSMMTLLLAIDSSKSLVICPDKRGNIARFINGINNHTLEGRKKQNCKCVRYSVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0336 369 MobiDBLite consensus disorder prediction 15 35 - -
Glsi02g0336 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 121 IPR013083 -
Glsi02g0336 369 Gene3D SET domain 146 369 IPR046341 -
Glsi02g0336 369 Pfam PHD-finger 62 107 IPR019787 -
Glsi02g0336 369 CDD SET_ATXR5_6-like 237 369 - -
Glsi02g0336 369 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Glsi02g0336 369 FunFam Histone-lysine N-methyltransferase ATXR5 146 369 - -
Glsi02g0336 369 SUPERFAMILY FYVE/PHD zinc finger 27 107 IPR011011 -
Glsi02g0336 369 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Glsi02g0336 369 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 133 367 - -
Glsi02g0336 369 ProSiteProfiles SET domain profile. 225 357 IPR001214 GO:0005515
Glsi02g0336 369 SMART PHD_3 61 107 IPR001965 -
Glsi02g0336 369 SUPERFAMILY SET domain 230 357 IPR046341 -
Glsi02g0336 369 Pfam SET domain 275 357 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0336 Glsi-ChrGlsi02 2142220 2146085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0336 59 115 C2H2 Transcription Factor Family AT3G01460 36.207 1.07e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi02g0336 SET 3.8e-07 No_clan