Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0330 ATGGTCAGAGACGATCTATACATCACTGTTCCCAGCTTCTTTCGCTGTCCTATATCTCTGGACGTCATGAAATCTCCCGTCAGCCTCTGCACCGGCGTTACCTATGACCGTTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACCTGCCCCGCCACCATGCAGGTCCTTCGTACCAAAGAATTTGTTCCCAATCGTACTTTACAGAGCCTTATCCAGATCTGGTCCGACTCGGTTCCCCACCGACCCCAGTCGCCCCACTCTCCCGCCACCAAACCGGTCCCTTCCCGGGATCAGGTCCTCGACGCTATCACGGACTTGGACAGCCACTGCGAGAGCCGATTCGATTCTTTAACCAAAATTGTATATTTTGGGGAAGATTCCGAAGAGAACCGGGAATTCCTTGCAAAAATGGACGGCTTCGTACCTATGCTCGTTGGTTTCCTCCGCAATGTCGATGGTGGCGTTGCCGGCAGCGTTGAGTTTCTCGAGAAAGTCGTTAATGCTTTGGATTCTGTTCTAAATAAAATTGAAGATCGCCAGCAATTGAAAAATTCCATATTAAAGAGCCAGGGCGATTGCTTAGCTTCTCTACTTCTTGTTCTGCAACAAGGCAGTTCCGGTTCGAAAATCGAATCGGCTAGGATTTTGAAATTTATAGCTGTGGACTCGGAGTCCAGGGTGTTGATCGCCGAAAAGGAAGGCCTGATATCCGAATTGCTTAATTCAATCGCTCCAGACAAAGATCCCGCTCTAATTGAAATCGGCTTGTCCTGCTTGGTGGCAATCTCAATGCCAAAACGAAACAAGTTGAAATTGGTCCATCTCGGAGCTGTCAAGATATTCTCGCAATTGCTTTCGGGGTCAAATTGGAGCGTTTCCCTAACCGAAATGGTCTTGAAACTGCTCGAAATGGTATCGTCCACCAAGGAAGGGCGGTCGGAGATTTGTGAGGACCCAACATGCGTGCGGGCGATATTGCAGAAGGTTCTAAAAGTATCGAGCGTGGCGACGGAGCACGCAGTAACGACACTGTGGAGTGTATGCTATCTTTTCCGTGATCAGAAGGCGCAGGAAGCGGTCACAATGGCCAACGGTTTGACCAAGATTCTGCTTCTGATGCAGAGCAATTGTTCACCAGCAGTTCGCCAAATGTCCGCCGATTTGCTCAAGATTTTTCGGGTCAATTCAAAATCCTGCCTTTCTTGCTACGACACTAAGACCACCCATATCATGCCCTTCTGA 1248 0.4936 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLRTKEFVPNRTLQSLIQIWSDSVPHRPQSPHSPATKPVPSRDQVLDAITDLDSHCESRFDSLTKIVYFGEDSEENREFLAKMDGFVPMLVGFLRNVDGGVAGSVEFLEKVVNALDSVLNKIEDRQQLKNSILKSQGDCLASLLLVLQQGSSGSKIESARILKFIAVDSESRVLIAEKEGLISELLNSIAPDKDPALIEIGLSCLVAISMPKRNKLKLVHLGAVKIFSQLLSGSNWSVSLTEMVLKLLEMVSSTKEGRSEICEDPTCVRAILQKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTMANGLTKILLLMQSNCSPAVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0330 415 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Glsi02g0330 415 PANTHER WDSAM1 PROTEIN 9 403 IPR045185 GO:0061630
Glsi02g0330 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Glsi02g0330 415 CDD RING-Ubox_PUB 11 63 IPR045210 -
Glsi02g0330 415 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Glsi02g0330 415 SUPERFAMILY ARM repeat 68 397 IPR016024 -
Glsi02g0330 415 Coils Coil 161 181 - -
Glsi02g0330 415 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Glsi02g0330 415 SUPERFAMILY RING/U-box 5 79 - -
Glsi02g0330 415 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Glsi02g0330 415 Gene3D - 100 403 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0330 Glsi-ChrGlsi02 2119932 2121179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0330 1 415 U-box Gene Family AT5G64660 56.398 1.97e-156 446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0330 02 2119932 2121179 Glsi02g0330 02 2119932 2121179 ECH