Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0311 ATGAGACTCCTCTTTCCAAGAAATCTCTTCCATTTCTCTTCTTCTTTTTCATCAGCTCCTCCGCTTCTTCTTCGGGTTTCTCACTTCTCAATTTCATCGAATTACCCATCCTCCTCGAGACGCTACGACGATGAATCCCGAAATGTGCGGGTTTCAGTATGGTGGGATTTCGAAAATTGCAATTTACCTGCTGATGTCAATGTTTGTAAAATCGCCAATAGCATAACTGAAGCTGTCAGGGCCAAAGGGATCAGGGGACCTATTCAAATTACGGCTTTTGGTGACATTTTGCAGCTCTCAAGGGCGAAACAGGAGGCCCTGTCTTCCACTGGGGTTAATCTCACTCACATTCCCAATGGCGGAAAGAATAGTGCTGATAGATCTCTTCTTGTTGACCTTATGTATTGGGTTTCCCAAAATCCTCCTCCAGCACATTTGTTTCTGATTTCTGGTGACCGAGATTTTGCTGGCATATTACACCGGTTAAGAATGAATAACTACAATATCTTGCTTGCAAGTCCAGAAAGGGCTCCCGGTGTTCTCTGTAGTGCAGCAACTATAATGTGGCACTGGAATTCATTGCTTAAAGGAGAAAATCTTACTGGAAAACACTTCAACCATCCTCCTGATGGTCCATTTGGTTCTTGGTATGGGCACCATAAGGTGCCTCTTGAAGATCCTTTCTCAGACGGTGAGCAGTCTACATGTTCACAAAGTGAGATGATCTCAGAACCTGTCGCAGATTTGAAGTTTCGTCAAATTCCAAGGGCTGTTACGAGGCATATTCAGCATATATTGTATTCACATCCAAAAGGAATCTCTGTATCAGAGCTTCGTGCAGAGTTGGCAAAAACTGATATGCACTTGGATAAAGATTACTATGGATATAGAAAATTTTCCCGCTTTCTTTTATCAGTGCCACGTGTAAAACTTCAGTTTGGATCTGATGGTCGGCTTTACGTACATTGCTTCCCCAAAAAATCTCCTGAACCCTTTGGGAGCAGTGTTGTCGATAAAGAGGAGTTGAAACATGTGGCTATATCAAAGTTAAATGGTGAGGGGGAAGATATGGTTAGAGATGCAGATGGGACACCACTAATGGCCTCATCTCATGAACCTAGTGTGGAAGATATTCCTGAAAAGGTTCAACAGGTTGGGGATGCGGCTAATGCACAAGTGACTGAGAATCAATTACCATCCAAGGAGAATGAAATTCTTAGCTCTAGTAGTGTAAGTCAAAGTGTTACAGAAAAGTATACAACTTTAGAGAATTATTCTGCTGAGCAAAGTTACACAGTAGTAGAAAAGAATGGTATTTTGAACGATCGTTCTGAAAAGTTAAAAGCCAAGGAAGACTATGTTAAACCAGCTAGAAAGGAGGCTGATGCAGGGTGTTTTATCCCTTATTCTTCACCAGTTGATGAATCTGTGATTGACAAAAGAATTGGTGGAAGTACTGAAACTAACAGCAATAATTTTCGAAGAAGTTTAACTTTCTTTGGTTGGATTAAAAGTTGGTGGCCATTCTGGAAAACTGGGGGAAACTCTGATGATTTGACTGCTCATCAGAACGAGATGGTTAGTAATACTGAAGAGCCCAAGTTATCAAATCTGAACCAGAAAGTTAGTCATTTTGAAGAGTCCAAGTTATCACATTTGAAACGCACAGTTAGTCATTCTGAAGGGCCCAAGTTATCAGAACTGAAACAGGCAGCTAGTCATTCTGAAGAGCCCGGGTTATTGAAACAGGCAGTTAGCCATTCTGAAGAGCCCGAGTTATCAGAAGTGAAACAGACAGTTAGTCATTCTGAAGGGCCCAAGTTATCAGAACTGAAACAGGCAGCTAGTCATTCTGAAGAGCCCGAGTTATTGAAACAGGCAGTTAGCCATTCTGAAGAGCCCGAGTTATCAGAAGTGAAACAGACAGTTAGTCATTCTGAAGATCCCGACTTATCAGAAGTGAGACAGACAGTTAGTCATTCTAGAGAGCCCAATTCATCTGAACTGAGACAGACAGCAAGTCCTTCTGGAGAGTCTGAGTTGTTTTTTAGTAGTTCCTTTTGGAGTGACATGGAAGCTTTTGCTTTCACCTCCAAAGGATCAATTCTTGTTTCCCAGTCAAGAAGCAGGGCAGATCTGGCACACAATTTTCAAAAGTATGGAACCCTGGTTCTTAGATCTCTCAGTGAAAATGATCTCCTTCAACTGGTTGGTTTGTTAATATCAGAGAAAAAATGGTTGGAGGAAAGGCCCTCTCAAACATTTCCTTTCCGGCTTACTCCACCAGCTGGAAAGAGTTTGATGGGCCTATCTCATAGTGCAAATGGCTTGAGATCTCTCTTTCTAAGCAGAACAACACAGTCCAACTTACAAAAATCATCAGAATGTGATGTGGATAAAAAACACCAGAGTATTCCTCACACTGGAGTTTCTTCTCCTGCCACTAAAAGGAAGCATACTGGGAGGTCTAGAAATGACATGTTAGCAGATATTCAGAAACTTGTGAACGAGATATTGAGGGAACACCCAGAAGGGTATAATATGGGTTCTTTCCGGAAACTTTTTCTTGAGAGGTATGACTATCCTCTTGATGTTCAAAAGCTTGGTTATCAAAAGTTGGCATCGTTGTTGCAAATTATGCCTGGATTGAAAATAGAGTCCACTTATATCTTTCCTACTGATCATGCCATTTGTGCTTCTGGCCTGGAAACGTCAATTCTCAATACTCAAGAGACCAATACAGGTGTTGCAGTGTCCAATTCAGATAGTGAGTTGTCTGATTCATCCCCTAAAGATGATAGCAATGACTCTTCATGGGAGGAATTAGGTCCTGTTTCTGTCAGCAATTCCAACCAGAGTGATCTGGAATCAAAATTAAAGCAGAAAGCTATCGAACTGGAGATGTCAATGCATCCTGATTATGAACCTTCTCTCTCAGATGATGATTCTTCTGAATCTGAAGGAGATAGCTCTTCTTTAACTCAACCAAAAGTGAAAGGAAAGCCAAAATATGATGTGGATGACAGTTCTCTTTTGCAAACTCTGGAGTCATGGTACAGCAGTAAAGAAGGAGAGGATAGTGTGAAGAAGTTAGAGAATGGTAAGACCATAGGCAATGTTCTGACTGATGGTTTAACTCCATCCAGGCAGTCCGCGACAGGAACCCATTCCAGGATTGAGTCAAGGGAGTATAGAGAGAAGCAAAAATCTCTGAAGAGCTATTCATTTGTTGCTGACCCGGTCTCAAATAAGAAGGACGAGCTGATTGATGGGATAATCCATAGCTTGAAGAAAGATGAGTTGAAGATGCAAAATTGA 3318 0.415 MRLLFPRNLFHFSSSFSSAPPLLLRVSHFSISSNYPSSSRRYDDESRNVRVSVWWDFENCNLPADVNVCKIANSITEAVRAKGIRGPIQITAFGDILQLSRAKQEALSSTGVNLTHIPNGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFAGILHRLRMNNYNILLASPERAPGVLCSAATIMWHWNSLLKGENLTGKHFNHPPDGPFGSWYGHHKVPLEDPFSDGEQSTCSQSEMISEPVADLKFRQIPRAVTRHIQHILYSHPKGISVSELRAELAKTDMHLDKDYYGYRKFSRFLLSVPRVKLQFGSDGRLYVHCFPKKSPEPFGSSVVDKEELKHVAISKLNGEGEDMVRDADGTPLMASSHEPSVEDIPEKVQQVGDAANAQVTENQLPSKENEILSSSSVSQSVTEKYTTLENYSAEQSYTVVEKNGILNDRSEKLKAKEDYVKPARKEADAGCFIPYSSPVDESVIDKRIGGSTETNSNNFRRSLTFFGWIKSWWPFWKTGGNSDDLTAHQNEMVSNTEEPKLSNLNQKVSHFEESKLSHLKRTVSHSEGPKLSELKQAASHSEEPGLLKQAVSHSEEPELSEVKQTVSHSEGPKLSELKQAASHSEEPELLKQAVSHSEEPELSEVKQTVSHSEDPDLSEVRQTVSHSREPNSSELRQTASPSGESELFFSSSFWSDMEAFAFTSKGSILVSQSRSRADLAHNFQKYGTLVLRSLSENDLLQLVGLLISEKKWLEERPSQTFPFRLTPPAGKSLMGLSHSANGLRSLFLSRTTQSNLQKSSECDVDKKHQSIPHTGVSSPATKRKHTGRSRNDMLADIQKLVNEILREHPEGYNMGSFRKLFLERYDYPLDVQKLGYQKLASLLQIMPGLKIESTYIFPTDHAICASGLETSILNTQETNTGVAVSNSDSELSDSSPKDDSNDSSWEELGPVSVSNSNQSDLESKLKQKAIELEMSMHPDYEPSLSDDDSSESEGDSSSLTQPKVKGKPKYDVDDSSLLQTLESWYSSKEGEDSVKKLENGKTIGNVLTDGLTPSRQSATGTHSRIESREYREKQKSLKSYSFVADPVSNKKDELIDGIIHSLKKDELKMQN 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0311 1105 MobiDBLite consensus disorder prediction 613 657 - -
Glsi02g0311 1105 MobiDBLite consensus disorder prediction 1039 1055 - -
Glsi02g0311 1105 MobiDBLite consensus disorder prediction 792 825 - -
Glsi02g0311 1105 Gene3D - 256 324 IPR041966 -
Glsi02g0311 1105 MobiDBLite consensus disorder prediction 546 675 - -
Glsi02g0311 1105 Gene3D - 822 889 IPR041966 -
Glsi02g0311 1105 MobiDBLite consensus disorder prediction 1038 1065 - -
Glsi02g0311 1105 CDD LOTUS 828 885 - -
Glsi02g0311 1105 CDD LOTUS 255 323 - -
Glsi02g0311 1105 ProSiteProfiles OST-type HTH domain profile. 254 325 IPR025605 -
Glsi02g0311 1105 Pfam OST-HTH/LOTUS domain 828 886 IPR025605 -
Glsi02g0311 1105 Pfam OST-HTH/LOTUS domain 257 321 IPR025605 -
Glsi02g0311 1105 Pfam NYN domain 50 185 IPR021139 GO:0004540
Glsi02g0311 1105 ProSiteProfiles OST-type HTH domain profile. 827 901 IPR025605 -
Glsi02g0311 1105 Gene3D - 42 192 - -
Glsi02g0311 1105 MobiDBLite consensus disorder prediction 915 955 - -
Glsi02g0311 1105 MobiDBLite consensus disorder prediction 546 562 - -
Glsi02g0311 1105 CDD PIN_limkain_b1_N_like 50 174 - -
Glsi02g0311 1105 PANTHER LIMKAIN B LKAP 37 816 IPR024768 GO:0005777|GO:0010468
Glsi02g0311 1105 MobiDBLite consensus disorder prediction 972 1006 - -
Glsi02g0311 1105 MobiDBLite consensus disorder prediction 939 955 - -
Glsi02g0311 1105 MobiDBLite consensus disorder prediction 658 675 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0311 49 197 C2H2 Transcription Factor Family AT5G61190 46.980 7.50e-38 152