Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0310 ATGGATTTGGACGATTTCCGATCGATATTGGAGACTGCCGGTGTGGATGTATGGATGTTCCTCGACACCGCAATCGATGTGGCTTCCTTGGATTACGGCAATGAGTTGAAGCATCGAAGGGATGGAATCGTTGAGCGCCTCTTCGCTGCCACTTCGGCTCCTGCACCTTGTCGGAACTGCGAAGCCAATAATCTCAGGTCTAATGGCCACGAAATAACCACTCCAATCACGAAACAGAGCACTCCTGAAGACAAAAGAGGTACCTCGCCTGCAACGCCGCACTCTCTCGGTAAAGACGATGACGACGATTTGGATCCTTACGGAGGCTTGCTCGATGACGAGCAGAAGAAGATTCTAGAGATCAAAGATCAACTTGAAGACCCTGACCAGTCTGAAGATTCTGTGGTGGAGTTGCTCCAAAATCTTGCGGACATGGATATTACATTCCAAGCGCTAAAGGAAACCGACATTGGGAGGCACGTGAATCGGTTGCGCAAACATTCGTCCAATGATGTTCGGAGATTAGTGAAGATACTAGTCAGGAAATGGAAGGATATTGTAGATGAATGGGTGAAGGTAAATCAACCAGGAGATCACGCTTCTCTAATGGCTGATGAAGACTCGCCTCAGCAGAAAAACCTCCAAAACGGGCATCATCAGATTCCTGATTTTGCATACTCGCCTAATCCACACAATGGGAGTTCTGGTTCTGGGTCGGAGAGGAACTATTCAGAAGCAGAACCAAAACAGAAGACAATGCCACAAAAAAAAGCTCCGCCAAAACCAGTGACATCAGTTCCTATTCCTGCTTCTGCTCCTCAAAACAGAAAGAGAGAACAGAGAGATAGCAATTTGGAAGCGGAGAGACTTGCTTCGGCAAGAAGACGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGGACGATCCAGGTGATGGACATCCATGAGATACCAAAGCCCAAGGCCAAGAATGCCTTCTTTGGAAAGAACAAAGGTGGTGGCGGCGGTTCTCAGGGAAGGCACTGGTAA 1041 0.4784 MDLDDFRSILETAGVDVWMFLDTAIDVASLDYGNELKHRRDGIVERLFAATSAPAPCRNCEANNLRSNGHEITTPITKQSTPEDKRGTSPATPHSLGKDDDDDLDPYGGLLDDEQKKILEIKDQLEDPDQSEDSVVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKILVRKWKDIVDEWVKVNQPGDHASLMADEDSPQQKNLQNGHHQIPDFAYSPNPHNGSSGSGSERNYSEAEPKQKTMPQKKAPPKPVTSVPIPASAPQNRKREQRDSNLEAERLASARRRLQENYKEAENAKRQRTIQVMDIHEIPKPKAKNAFFGKNKGGGGGSQGRHW 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0310 346 SMART TFS2_5 118 189 IPR003617 GO:0005634
Glsi02g0310 346 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 116 198 IPR035441 -
Glsi02g0310 346 MobiDBLite consensus disorder prediction 63 88 - -
Glsi02g0310 346 MobiDBLite consensus disorder prediction 200 346 - -
Glsi02g0310 346 MobiDBLite consensus disorder prediction 206 243 - -
Glsi02g0310 346 ProSiteProfiles TFIIS N-terminal domain profile. 113 190 IPR017923 -
Glsi02g0310 346 Pfam TFIIS helical bundle-like domain 138 187 IPR017923 -
Glsi02g0310 346 Coils Coil 287 314 - -
Glsi02g0310 346 MobiDBLite consensus disorder prediction 63 109 - -
Glsi02g0310 346 MobiDBLite consensus disorder prediction 95 109 - -
Glsi02g0310 346 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 346 IPR044790 -
Glsi02g0310 346 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 111 199 IPR035441 -
Glsi02g0310 346 CDD TFIIS_I 115 188 - -
Glsi02g0310 346 MobiDBLite consensus disorder prediction 275 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0310 Glsi-ChrGlsi02 2008663 2010648 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Glsi02g0310 Med26 2e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0310 02 2008663 2010648 Glsi02g0310 02 2008663 2010648 ECH