Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0303 ATGGACTTCGACGAGTACGATTACTTGGAAAAGACAGTGGAGGAACAGGAAGATCGAGATTCGACGAAGAACAAGGAGAGAAGAGAGAAGAGTGAAAGGAGTTACAGGAAGCGCGAGGTCGACGAGGATCTCGACGGTGAAGAAAAGAAGAGCAAGAGGTCCAGAGGCGACGACGAGAATGGGTCAAAGAAGGATCGTGATGACCGCGAGAGAGAACGGTCTAGTCGAGAAAAGGAGCGGCATAGGAGTGGTAGAGAGAGGGAAGGGGAGAGGGAGCGAGAGAGGAGTAGTAGAGAGAAAGATAGGGAGAAAGAGAGAGACAAAGATCGGGATAAGGATAGAGAGAGGGAAAGAGAAAGAATGGATAGGGATAGAGAGAGGGAGAGGGAGAGGAGAGAGAGGGAAAGAGAACGGGAGAGAAGGGAGAAGGAGAAAGAAAGGGAGGACAGTGAGAGGTCCAGGAGAAGCAGAAGTCGTCCTGATCGAGATAGAGAAAGAGAACGAGAATTGGAAACGAGAGATAGTCGGAGATTGAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCCTAAAAGCAACTGAGAGAGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTTTGATCATGGATAGGAACTCAAGACGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCGATGGCAATTGCTCTCTCTGGTCAACTGCTTTTTGGACAACCTGTAATGGTCAAGCCTTCTGAGGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCTAGCGGAGGTGCAGGTGCAGCAGGACCATATGGAGCGGTGGATAGGAAACTGTATGTCGGGAACCTTCACTTCAACATGACTGAGAGTCAGCTGAGAGAGATTTTTGAGCCATTTGGTCCGGTGGAGGTTGTTCAACTGCCTCTTGATCTGGAGACAGGACATTGCAAGGGTTTTGGGTTTATTCAATTTTCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTGAATGGGAAGTTGGAGATTGCTGGTAGGACTATCAAGGTTTCGTCTGTAACTGATCATGTAGGATCACAAGATCCAAGTGCAAAATCTGCAGACTTTGATGATGACGAAGGCGGATTGTCCTTAAATGCCCAATCAAGAGCATTGCTTATGCAAAAGCTGGATCGCTCTGGTACCGCTACGAGCATTGCAGGGTCTATTGGTGCGCCCATTATGAATGGGTCTGCTCCTGCCCAGCAGGCTGTTAGCTTGCCTATGGGAGGTCCGGGTATAATGCCTGCACCAGCTCTCACAATGCCCATTATGCCTATCCCAGCGGCAGAACCAGTTGGAAGCCCTAGTGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAACCACCGAGACGGATCCAGATTTTGATGAAGATATTAAAGAGGATGTGGAAGAGGAATGTTCTAAATTTGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGCGCAGGTTTTGTGTATTTGCAATTTGAAACGGTGGAAGCAGCAAGTGCTGCTCAACAGGCAATGCACATGAGATGGTTTGCACGCAGATTGATTTCAGCACTCTTCATGCAACCTCAGATATACGAAGCTAAATTTAAAGGAGAAGCTTGA 1701 0.4709 MDFDEYDYLEKTVEEQEDRDSTKNKERREKSERSYRKREVDEDLDGEEKKSKRSRGDDENGSKKDRDDRERERSSREKERHRSGREREGERERERSSREKDREKERDKDRDKDRERERERMDRDRERERERRERERERERREKEKEREDSERSRRSRSRPDRDRERERELETRDSRRLRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNASSGGAGAAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFIQFSHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDPSAKSADFDDDEGGLSLNAQSRALLMQKLDRSGTATSIAGSIGAPIMNGSAPAQQAVSLPMGGPGIMPAPALTMPIMPIPAAEPVGSPSECLLLKNMFDPTTETDPDFDEDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLQFETVEAASAAQQAMHMRWFARRLISALFMQPQIYEAKFKGEA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0303 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Glsi02g0303 566 Coils Coil 118 156 - -
Glsi02g0303 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 472 555 IPR000504 GO:0003723
Glsi02g0303 566 SMART rrm1_1 299 372 IPR000504 GO:0003723
Glsi02g0303 566 SMART rrm1_1 473 550 IPR000504 GO:0003723
Glsi02g0303 566 SMART rrm1_1 197 269 IPR000504 GO:0003723
Glsi02g0303 566 SUPERFAMILY RNA-binding domain, RBD 298 555 IPR035979 GO:0003676
Glsi02g0303 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 273 IPR000504 GO:0003723
Glsi02g0303 566 MobiDBLite consensus disorder prediction 12 195 - -
Glsi02g0303 566 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 391 490 IPR029123 -
Glsi02g0303 566 NCBIfam splicing factor, CC1-like family 85 562 IPR006509 GO:0003723|GO:0005634|GO:0006397
Glsi02g0303 566 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 562 IPR006509 GO:0003723|GO:0005634|GO:0006397
Glsi02g0303 566 CDD RRM1_RBM39_like 197 269 - -
Glsi02g0303 566 FunFam Splicing factor CC1-like 282 387 - -
Glsi02g0303 566 CDD RRM3_RBM39_like 471 553 - -
Glsi02g0303 566 FunFam Splicing factor, CC1-like protein 467 566 - -
Glsi02g0303 566 Gene3D - 293 389 IPR012677 -
Glsi02g0303 566 Gene3D - 468 565 IPR012677 -
Glsi02g0303 566 Gene3D - 189 283 IPR012677 -
Glsi02g0303 566 FunFam Splicing factor CC1-like 123 281 - -
Glsi02g0303 566 Coils Coil 86 106 - -
Glsi02g0303 566 SUPERFAMILY RNA-binding domain, RBD 189 291 IPR035979 GO:0003676
Glsi02g0303 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 495 548 IPR000504 GO:0003723
Glsi02g0303 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 265 IPR000504 GO:0003723
Glsi02g0303 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 370 IPR000504 GO:0003723
Glsi02g0303 566 MobiDBLite consensus disorder prediction 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0303 Glsi-ChrGlsi02 1957809 1964593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0303 270 371 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.81e-09 57.4