Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0300 ATGTGTATGATAAAACTGGCGAATCCTACAGACAAAGCAGAGAAGCTGGTTGTGGATGAACACAGAAACAACCCCATGTCGTCAATGCCAATAATATTTCCAGGTATGAATAGGGAGAGGGAGATGTCTGCCATAGTCTCCTCTCTGATCCATGTGGTGTCCGGAGAGGTTCCCGTAGACTCCAGTGCAATTGCCAGCGCTGGTGGCGGTTCTGCTGTTACGTTAAACTCGCCTTCTGCTTCAGCGACACCATCTAATTCGTCTTCTTCATCTTATGCTGGAAACTCTGCTCTTAAAAGAAGTAGGGAAGATAATAGATCCTTTGCTGACATCTCACCTGGAGTTTCATCCCCTGCTATTCAACCAATTGCATGCACAAGAGCACAAGGGGGGCAAATGTCAAATGCTGTGTATGAATACAGTATAGGCAATGTGAGAGAGCAGGAGCAACCGAGGAGAAAATACAGAGGAGTGAGACAGAGGCCGTGGGGGAAGTGGGCAGCAGAAATCAGAGATCCATTTAAAGCTGCGAGAGTGTGGTTAGGCACATTTGACACAGCCGAAGCTGCTGCCAGAGCCTATGATGAAGCTGCCTTGCGCTTCAGAGGAAACAAGGCAAAACTCAATTTCCCCGAAAATGTCAGACTCCGGGAACCTCCCGCCAATCCTCCAGCCACCCAATGGAGAATGTCGGGTTCTCCTAGTACCCTGTTGTCCATTCCGACATCCACCGACCCAATCGTTCACGCTGAACCTCTTCTTCACCCTCTTCAGAGTTCTTCAAGCGATTTTTACAACTATTCCCAATTTACAGAGTTTCCCATGAATTTATATGATCCGATGATTTTGCCTACTACTATGGCCTATCACCTTCAATCATCCTCATCGCCATCAGCATCGTCGTCGTCTTCTTCTATGAATTCTTCGCAGGCAGCTCCACTTTTGCAGGCTCAGTTCACAGCGGTGAGGGGTCAGAGTAGTGGTTCAGAGTACGTACAATCAGCGTGCTCAGCCTCCGGTCATAGCTCATCTTCCACCGCATGA 1044 0.4837 MCMIKLANPTDKAEKLVVDEHRNNPMSSMPIIFPGMNREREMSAIVSSLIHVVSGEVPVDSSAIASAGGGSAVTLNSPSASATPSNSSSSSYAGNSALKRSREDNRSFADISPGVSSPAIQPIACTRAQGGQMSNAVYEYSIGNVREQEQPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVRLREPPANPPATQWRMSGSPSTLLSIPTSTDPIVHAEPLLHPLQSSSSDFYNYSQFTEFPMNLYDPMILPTTMAYHLQSSSSPSASSSSSSMNSSQAAPLLQAQFTAVRGQSSGSEYVQSACSASGHSSSSTA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0300 347 PANTHER DNA-BINDING DOMAIN 96 308 IPR044808 GO:0003700|GO:0009873
Glsi02g0300 347 MobiDBLite consensus disorder prediction 67 115 - -
Glsi02g0300 347 ProSiteProfiles AP2/ERF domain profile. 154 211 IPR001471 GO:0003700|GO:0006355
Glsi02g0300 347 MobiDBLite consensus disorder prediction 67 98 - -
Glsi02g0300 347 Gene3D AP2/ERF domain 153 213 IPR036955 GO:0003700|GO:0006355
Glsi02g0300 347 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
Glsi02g0300 347 FunFam Ethylene-responsive transcription factor 2 153 212 - -
Glsi02g0300 347 CDD AP2 154 213 IPR001471 GO:0003700|GO:0006355
Glsi02g0300 347 PRINTS Ethylene responsive element binding protein signature 155 166 IPR001471 GO:0003700|GO:0006355
Glsi02g0300 347 PRINTS Ethylene responsive element binding protein signature 177 193 IPR001471 GO:0003700|GO:0006355
Glsi02g0300 347 SMART rav1_2 154 217 IPR001471 GO:0003700|GO:0006355
Glsi02g0300 347 Pfam AP2 domain 154 203 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0300 Glsi-ChrGlsi02 1940648 1942089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0300 149 289 AP2-EREBP Transcription Factor Family AT5G64750 56.774 2.30e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g0300 AP2 4.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0300 02 1940648 1942089 Glsi02g0300 02 1940648 1942089 ECH