Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0276 ATGGACTTGACCGCGAAGCTTCATCACCTAGAGCTCAGCTCAAGTTTCCTCACCGGCACAGTCATTTTGGACACACGGAAAGCCGCTGTACGCCCGTACGTTTGCCCAGTTTCAAATCGTATAGCTTCTCAAACCATTAGAGGTAACATTAATTTAATTAAGACCAGTCGATTCTTTGGCCGGAAAAGTGCGATTTTTAATACCGCAGCTAGTTCATCTGCTGTTGCTGTCAAGACATCTGTGGCAGAAACCCCGACCAAAGAGGATATCGAGTCTTTGTTTTCCGATGCTTCGGTCGATGAATTTGCTAATAAACGGGTGAATAAGCAATCAAATACCGGTGCTTCGAGCATTTCATCCGGTGTCAAGCTAGAAAATGTGAGTAAAAGCTACAAGGGTGTCACTGTGTTGAAAGATGTAAGTTGGGAAGTTAAGAAGGGTGAAAAAGTGGGATTGGTTGGTGTAAATGGTGCAGGGAAGACGACCCAGATGAGAATTATTGCTGGTCAGGAAGACCCAGACTCGGGGAATGTGATAAAAGCCAAACCAAATATGAAAATCGCATTTTTGAGTCAAGAATTTGAGGTCTCTCTGAGTAGGACGGTAAGGGAGGAATTTCTGAGTGCGTTTAAAGAGGAAACGGAGATAGCAGCGAAGTTGGAGAAGGTGCAGAAGGCACTGGAAGGTGCTGTGAACGATTTAGAATTGATGGGGAGGCTTTTAGACGAGTTTGATTTGCTTCAGAGGCGGGCCCAGGCAGTAGACTTGGATGAAGTGGATGCAAAGATTAGTAAATTGATGCCAGAACTTGGGTTTGCACCAGAGGATTCAGACAGGTTGGTGGCTTCGTTTAGTAGTGGGTGGCAGATGAGGATGTCTCTTGGGAAGATTTTACTCCAGGAGCCGGATTTATTACTGTTGGACGAACCCACAAATCACCTTGACCTAGACACTATCGAGTGGCTTGAAGGCTATCTTAACAAGCAGGATGTGCCAATGGTTATCATTTCCCATGACAGAGCTTTTCTTGATCAGCTGTGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACGTTCGAGGGAAACTATTCCAAGTATGTAGTTTCAAAAGCAGCCTGGATTGAATCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAGCAGACAAAAGACTTAATAAACAGGTTAGGCGCTGGAGCAAATTCTGGCCGTGCTTCATCTGCTGAGAAGAAGCTGGAGAGACTTCAGGAAGAGGAACTAGTAGAGAAGCCATTTCAACGGAAACAAATGAAAATCAGGTTTCCTGAGCGTGGAATGAGTGGAAGATCTGTTGTAACAATTAAGAACTTAGAATTTGGCTTTGAGGATGAGGTGCTTTTCAACAAGGCAAATCTTACAATTCAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTGCTGAAATTGATAATGGGCTTAGAGAAGCCAAATGGGGGGGAAGTTGTGCTTGGGGAGCATAATGTATTACCAAACTATTTTGAGCAAAATCAGGCTGAGGCACTTGATCTGGACAAGACAGTGCTTCAAACAGTAGAAGAAGCTGCTGAGGACTGGAGGATTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTCAAATCTGATATGCTTGACCGGAAAGTTTCTCTATTGAGTGGTGGTGAGAAGGCACGTCTGGCTTTTTGCAAATTTATGGTAAAACCATCAACTCTGCTTGTTTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAACTGAGTACAAGGGCACTGTTATTACAGTGTCTCATGATCGATACTTTATAAGACAGATAGTTAATAGAGTGATCGAAGTTAAAGATGGAACTTTACAGGATTATGTTGGCGACTACAATTATTATTTAGAGAAGAATCTTGATGCTAGGGCCAGAGAGCTTGAACGTGAGGCTGAGCTTGAGGAGAAAGCTCCAAAAGTGAAAGCCAAATCCAAGATGTCAAAGGCTGAGAAAGCAGCACGGAAGAAACAAAAAATGCAGGCTTTTCAGGCTGCAAAGCAAAAGTCTAAAGGTGTGAAAAATTCAAAGAGATGGAATTGA 2151 0.4296 MDLTAKLHHLELSSSFLTGTVILDTRKAAVRPYVCPVSNRIASQTIRGNINLIKTSRFFGRKSAIFNTAASSSAVAVKTSVAETPTKEDIESLFSDASVDEFANKRVNKQSNTGASSISSGVKLENVSKSYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGQEDPDSGNVIKAKPNMKIAFLSQEFEVSLSRTVREEFLSAFKEETEIAAKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQAVDLDEVDAKISKLMPELGFAPEDSDRLVASFSSGWQMRMSLGKILLQEPDLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSKYVVSKAAWIESQYAAWEKQQKEIEQTKDLINRLGAGANSGRASSAEKKLERLQEEELVEKPFQRKQMKIRFPERGMSGRSVVTIKNLEFGFEDEVLFNKANLTIQRGEKIAIIGPNGCGKSTLLKLIMGLEKPNGGEVVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITEYKGTVITVSHDRYFIRQIVNRVIEVKDGTLQDYVGDYNYYLEKNLDARARELEREAELEEKAPKVKAKSKMSKAEKAARKKQKMQAFQAAKQKSKGVKNSKRWN 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0276 716 SMART AAA_5 146 361 IPR003593 GO:0016887
Glsi02g0276 716 SMART AAA_5 473 641 IPR003593 GO:0016887
Glsi02g0276 716 Pfam ABC transporter 465 596 IPR003439 GO:0005524
Glsi02g0276 716 Pfam ABC transporter 137 312 IPR003439 GO:0005524
Glsi02g0276 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 449 664 IPR003439 GO:0005524
Glsi02g0276 716 ProSitePatterns ABC transporters family signature. 568 582 IPR017871 GO:0005524|GO:0016887
Glsi02g0276 716 Gene3D - 118 404 IPR027417 -
Glsi02g0276 716 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 121 707 - -
Glsi02g0276 716 Gene3D - 411 678 IPR027417 -
Glsi02g0276 716 CDD ABCF_EF-3 449 641 - -
Glsi02g0276 716 Pfam ABC transporter 351 438 IPR032781 -
Glsi02g0276 716 Coils Coil 654 674 - -
Glsi02g0276 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 429 654 IPR027417 -
Glsi02g0276 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 356 IPR027417 -
Glsi02g0276 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 122 380 IPR003439 GO:0005524
Glsi02g0276 716 FunFam Putative ABC transporter ATP-binding component 123 407 - -
Glsi02g0276 716 FunFam ABC transporter ATP-binding protein 409 678 - -
Glsi02g0276 716 CDD ABCF_EF-3 122 352 - -
Glsi02g0276 716 ProSitePatterns ABC transporters family signature. 284 298 IPR017871 GO:0005524|GO:0016887
Glsi02g0276 716 MobiDBLite consensus disorder prediction 668 694 - -
Glsi02g0276 716 Coils Coil 217 237 - -
Glsi02g0276 716 MobiDBLite consensus disorder prediction 668 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0276 Glsi-ChrGlsi02 1758037 1762326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0276 446 666 Calmodulin-binding Proteins AT2G36910 25.506 5.76e-13 70.9