Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0261 ATGACAGGGAAGAGAAACCAAAGCAGCCCTGTGGGAAGCCCAACATCTGGGGACATCTCTTGTAAAGAGCAAGACAGGTTCCTCCCCGTTGCCAACGTGAGCCGCATCATGAAAAGGGCACTCCCAGCCAATGCCAAAATCTCCAAGGAAGCCAAGGAAACAGTCCAAGAATGTGTTTCTGAGTTCATCAGCTTCATTACTGGTGAAGCATCCGACAAGTGCCAAAGAGAGAAGAGGAAGACAATTAACGGCGACGATCTTCTTTGGGCCATGACAACGTTGGGGTTTGAGAACTATGTTGGACCTTTAAAGGTTTACCTCAACAACTACAGAGAAACGGAGGGAGAAAAGAGTTGTATGGCTAGACAAGAAGATCACTCTCCAACAGAAGCTAATGATCATGAGGTTGCTGAAATTAACAAGCTGACCAATTCTGAGTCCGCCAGTTTCAATGGTGGGTTCTACTCTGTTGGGTCTCAAGTGAGTCCAAAGAGCTTCATAGAGGCCGATGAGAGTCCCATGAACAGGGCTCTTGCTCAGAATGTGATCCCTGGAGACGCGGGTGCAAGGGTGATGGCAGCAAACCAGCGTTATAGGGTTGAATGGTAG 609 0.4828 MTGKRNQSSPVGSPTSGDISCKEQDRFLPVANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYRETEGEKSCMARQEDHSPTEANDHEVAEINKLTNSESASFNGGFYSVGSQVSPKSFIEADESPMNRALAQNVIPGDAGARVMAANQRYRVEW 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0261 202 MobiDBLite consensus disorder prediction 1 21 - -
Glsi02g0261 202 FunFam Nuclear transcription factor Y subunit B-3 16 140 - -
Glsi02g0261 202 MobiDBLite consensus disorder prediction 1 20 - -
Glsi02g0261 202 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 144 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi02g0261 202 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi02g0261 202 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Glsi02g0261 202 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Glsi02g0261 202 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Glsi02g0261 202 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Glsi02g0261 202 Gene3D Histone, subunit A 17 151 IPR009072 GO:0046982
Glsi02g0261 202 SUPERFAMILY Histone-fold 24 147 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0261 Glsi-ChrGlsi02 1667532 1668140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0261 12 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.739 6.85e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi02g0261 CBFD_NFYB_HMF 3.3e-26 CL0012